<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25966

Description Uncharacterized protein
SequenceMAAGAAVTELELERRVMAAVKASAERGDPPLLQAAEAARCIREGPTASAPGGGLALSQALVTNLCFAHNTAAMWKLLDQAMLSRLVDPLHTLALLTPRVVPSRREQPEAYRLYLDLLGRYAVAPVYPERMENKDMLAKSIDGAMQLSHRFGFQHLDFGHTVILFVLSLVNMLIDCILDDCGLPVTSADEHGNRNDMNFNGNGRSLDRGDEHREHLRRKNILMSIEVVEKVTANKIVQVFLRLVNRNTPENFNYLLRKLPLIGALKKKNTLSPYNLLDSLIMNIQNVISTDYQLDRKRLLGVPVSIQPCSSAVYSIFRAGKVSCWISFDMFMENAMDGRHLHAISSVEYLTELSKTLQVLNRATWQETFQALWISALRLVQRGPDASEGPFPSLDSRLCMLLAIIPLSIATIVKEEVGNLEGETTSVIRGQLVSSLQILRQFFGLLSPPPAAVHLANTAARKAAVVLSNLKNGRENMYTSFKDSPSIKAVGNMLHLIVEACITRNLIDTSAYFWPGYVVPLKESSPVQESPWPSLVEGSPLIELKDALMVTPASSVAELEKLYSFAVSGSPEEKLAASKILCGASLLRGWNIQEHVVQMVLKLLSTFLPLDSGPEGRYVQHMPMLHALVSGISSIDTVHILSMYGLVPEVASMLMPLCEIFGSLPPSDHRSCKFEEASVYSVFSCAFLSLLRLWKFHRPPIENALSRRGVSVWSELHLDFLLLLRNSHSSLKNLSKVTQSSIFELDTPFQKPVYIDSFPKLRAWYFQNQACIASTLSSACSRTTVLHVANMILKIICHNKVPKGGALSVNTQSTANSSTSSSPAGAQEDMCQWPTLPAWEILEAVPFVLEAVLTSCAHGRLSSRDLVTGLRDLAGFLPASLAAIVSYFSAEVTRGIWKPVMLNGMDWPSPAATLPVVESETKEVLAFAGVHINICPRPRFVMPMLPLPIAALISLSITVKMDEFSHLHGIIGQGIEICTTSSSWPTAQIIGALWSQKVRRWHDFIILACSQSPFTRDNTAVAQLIRSCFSSFIGPLVDGRSCFAANRGVANLLGQTFDEKAHRLAVAPGFLYMRSCRLFPNNSFVCEEILEVVVERAHALANACSSDRPARLRSDSLPLSAASSLVEQIASLAATMLCHAGGVNLICLLYEQIMPTLLLSGGKAKLGSAGQVCSIIEGFTLAHVLLVSGASIWGVGETSPAYTSIYTSKRQRVVDRHLEFMTRVMEGNIVLGCGDTTWRSYVVCFVNLLVNFVPTWIPEVKLKTLQKLASGLQKWHEGDLALSLLERGGAKTVTSVVESLL
Length1300
PositionTail
OrganismSorghum bicolor (Sorghum) (Sorghum vulgare)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Sorghinae> Sorghum.
Aromaticity0.07
Grand average of hydropathy0.177
Instability index48.11
Isoelectric point8.00
Molecular weight142629.11
Publications
PubMed=19189423
PubMed=29161754

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25966
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     307.17|     106|     138|     225|     362|       1
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  231-  347 (158.38/136.88)	TANKIVQVF....LRLVNRNtPEN....FNYLLRKLPLIGALkkkNTLSPYNLLDSLIMNIQ....NVISTDY....QLDRKrLLGVpvsIQPCSSAVY.............SIFRAGKVSCWISF.DMFMENAMdGRHLHAIssVE
  363-  498 (148.79/72.72)	TWQETFQALwisaLRLVQRG.PDAsegpFPSLDSRLCMLLAI...IPLSIATIVKEEVGNLEgettSVIRGQLvsslQILRQ.FFGL...LSPPPAAVHlantaarkaavvlSNLKNGRENMYTSFkDSPSIKAV.GNMLHLI..VE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     294.03|      99|     318|     513|     624|       2
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  513-  624 (159.35/128.67)	WPgyVVP...LKESSP.VQESPWPSLVEG....SPLIE.LKDALMVTPASSVAELEKLYSFAVSGSPEEKLAA...SKILCGASLLRGWNIQE...HVVQMVLKLL..................................stflpldsgPEGRYVqhMPML
  730-  795 (67.26/33.60)	.......................................LKNLSKVT.QSSIFELDTPFQKPVYIDSFPKLRAwyfQNQACIASTLSSACSRTtvlHVANMILKII.......................................................
  832-  944 (67.42/37.22)	WP..TLPaweILEAVPfVLEAVLTSCAHGrlssRDLVTgLRDLAGFLPA.SLAAIVSYFSAEV...........................................trgiwkpvmlngmdwpspaatlpvvesetkevlafagvhinicPRPRFV..MPML
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.43|      15|     560|     708|     724|       3
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  677-  691 (27.56/10.37)	SVYSVFSCAFLSLLR
  710-  724 (27.87/12.28)	SVWSELHLDFLLLLR
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.49|      24|      25|      11|      34|       4
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   11-   34 (40.41/28.19)	ELERRVMAAVKASAERGDPPLLQA
   36-   59 (42.08/29.71)	EAARCIREGPTASAPGGGLALSQA
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.89|      23|      25|    1145|    1169|       5
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 1145- 1169 (35.35/28.52)	ICLLYE..QIMPTLLLSGgkAKLGSAG
 1171- 1195 (35.54/21.57)	VCSIIEgfTLAHVLLVSG..ASIWGVG
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     124.17|      28|      35|    1039|    1066|       6
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 1010- 1033 (33.31/21.43)	QSP..FTrDNTAVAQLIRSCFSS.....FIG
 1039- 1066 (47.93/34.45)	RSC..FA.ANRGVANLLGQTFDEKAHRLAVA
 1073- 1102 (42.92/29.99)	RSCrlFP.NNSFVCEEILEVVVERAHALANA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25966 with Med33 domain of Kingdom Viridiplantae
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