<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25964

Description Uncharacterized protein
SequenceMADGLDRWRDFFRGAGAGICDVIENAILVAAADAPRELLHRRDRIAERLFTTLRRDAAPPSFGSAAASTTPATPVEEDKGSVRRVAEKECKVDSSSNGAHGGGGHGHGDEDDDSDSDDERLRRAAASNYGHSYDDDDEDDDQQQEDEQQHAADDTEEGKEEEDHEAEELEALTNEIDEESQIVGEVIRIKELLLHKEDHSDATLFESLRRLQLMQLSVSTLKATEIGRAVNRLRKHNSQEIRHLVRTLIEGWKVLVDEWVSTTNAALAENSPGSSNPSVVDEEEEEGLPSPPLDEGAFFATQTTSIQLSEFFDEMDEDGNLRHNNDMSLGSKRGNNGGRLANHSAVARQEPPRSSPGVVEKVQSRRPELARQEPPMRQAIPQNPPSSSLHAKPHGVLNKQSNPSSYESGPGRPLKAAQQRPLGDMKPKQTREHIAIERKPMASQMDKSRLGTQSSAGAKLELAKPKVYDDGLDNNRKLEAAKRRLQERYQEAENAKRQRTIQVMELGDIPKPKHQNRQPMVKSRNNLRNWANGRR
Length535
PositionUnknown
OrganismSorghum bicolor (Sorghum) (Sorghum vulgare)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Sorghinae> Sorghum.
Aromaticity0.03
Grand average of hydropathy-1.031
Instability index62.06
Isoelectric point5.31
Molecular weight59556.72
Publications
PubMed=19189423
PubMed=29161754

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25964
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      71.30|      16|      16|     388|     403|       1
---------------------------------------------------------------------------
  328-  352 (18.19/ 8.26)	SLGSKRgnnggrlanHSAVA.RQEPP
  388-  403 (30.39/19.00)	SLHAKP.........HGVLN.KQSNP
  405-  421 (22.72/12.25)	SYESGP.........GRPLKaAQQRP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.91|      18|      82|     422|     441|       2
---------------------------------------------------------------------------
  422-  439 (31.28/25.32)	LGDMKPKQTREHIAIERK
  460-  477 (30.63/15.97)	LELAKPKVYDDGLDNNRK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      78.91|      16|      16|     131|     146|       3
---------------------------------------------------------------------------
  105-  120 (28.40/14.27)	HGHGDEDD...DSDSDDER
  131-  146 (29.61/15.19)	HSYDDDDE...DDDQQQED
  150-  168 (20.90/ 8.56)	HAADDTEEgkeEEDHEAEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.51|      15|      18|     353|     367|       5
---------------------------------------------------------------------------
  353-  367 (25.12/15.43)	RSSPGVVEKVQSRRP
  371-  385 (28.39/18.43)	RQEPPMRQAIPQNPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.21|      14|     190|      68|      81|       6
---------------------------------------------------------------------------
   68-   81 (25.65/16.32)	STTPATPVEEDKGS
  261-  274 (24.56/15.33)	STTNAALAENSPGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.09|      18|     152|      38|      55|       7
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   38-   55 (31.94/22.66)	LLHRRDRIAERLFTTLRR
  193-  210 (32.15/22.85)	LLHKEDHSDATLFESLRR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25964 with Med26 domain of Kingdom Viridiplantae
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