<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25959

Description Uncharacterized protein
SequenceMDGGANWRPTQGADPAAVAAAGGVDPNAAAPAGSDWRTQLQPEARHRIVNKIMETLKKHLPVSVPEGLTELHKIAVRFEEKIYTAATSQSDYLRKISLKMLSMESQTKTQQNAGSAQVIPNQNPPGPAPGLPPQGSNPAQSSAIPLMSQQQTRQPNASTSVQGSLPSQTSTLQNLSGLPQNTMNNGLAQGTPQDMYAAQRQMAGRQQQQQQQQQAHNQLIYQQQKLLMSQKLQQNSLMQPHIQQQQTLLQSTQMQSSQQSMMQMSSGLQPGQTTIPQTQSMAMQSATQSGIQQNPLNSVQQSVQSLLQQPTQSVVRQQQHPQSMHQQPSLQQTQPTQQPNIPLQQQPQQLMGQQSNLQQNQLMNQQSGAVEMQQQQRLPVQSNNLLNMQQTQQMMNQQSMPLHQPQQLANQGNMSSLHQQQQQNQQQQQQQLLGTAPNVRMHMLQQQKPIQQPQQQQHAQQTSMGLMQPQSQQNQLQQPQQHMMSQFQSQPNQVQQQLGMQQRLQTSAGMLLQQNNIDQQKQYVQAQRGLQEAPSTSVDSTAQTGHPGGDLQEELYQMIKSLKDQYFAELNDLYNKISMKIQHIDNHMPAQKSAEQYEKMKGFKLMLERTLHFLQVNKNSIQPAFREKIPVYERQILSILSSQRRKPVQAPGQQIFQQSGGQAPSSNISQQHQTSQGLQQHDSHTNQMPQASIPSMNTGVQTSGAPGIQHVPAPQATNFGVPTTQQNVTNAPQAGSNLENAQGNSFNPVQHGSMGTALQQGSTGPMQGALNAQQQSSSNMISNNAMSTMQTNTNAMQANANSLQQLKQQHQEHQMMQSQQMKQRQQMMHQIQQKQMLQQQLPIQQLQKQQQQGQMPVPQLHSGNDVNELKVRQGAAIKSGMYQQLSQRNYYHQQIKQGGVFPISSPQNLQASSPQISHHSPQVDQHSLLQSQVKTGTPLHSANSPFVPSPSPPVAPSPMPVDSDKPLSNLSSLTSAGQAHQQTSLAPQTQSIAVNTPGISASPLLAEFTSADGSQVNLPTQVPTKSAAERPLDRLLKALRTTQRESLSAAVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITHDGSGASKKMKRDTSAMPLNVSSAGSVNDSLKQSYTVGTPELQSTATSRVKWQRAEVNHALMEEIQEINQQLIDTELHVSEDDAESFTASEGGEGTVIRCTFTAVAVSPSLKSMFASAQMSPILPLRLLVPASYPKCSPVLLDKFPDEQCRNSDDLSTKAKSKFSVLLRGLAEPMSLREIARTWDACARKVIAEYAQQTGGGSFSSSYGCWESCVGAS
Length1314
PositionTail
OrganismSorghum bicolor (Sorghum) (Sorghum vulgare)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Sorghinae> Sorghum.
Aromaticity0.03
Grand average of hydropathy-0.763
Instability index70.40
Isoelectric point9.24
Molecular weight144265.99
Publications
PubMed=19189423
PubMed=29161754

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25959
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     444.54|      55|      57|     199|     253|       1
---------------------------------------------------------------------------
   90-  154 (45.82/ 6.67)	SDY......LRkislKMLSMES...Q...TKTQQNAGSaQVIPNQNPPGP....A........PG..LppQGSNPAQssaiPL.....MS..QQ.QTR..........Q
  199-  250 (88.77/22.14)	.........QR....QMAGRQQ...Q...QQQQQQAHN.QLIYQQQKLLM....S........QK..L..QQNSLMQ....PH.....IQ..QQ.QTL.........LQ
  251-  308 (55.39/10.11)	STQ..mqssQQ....SMMQMSS...G...LQPGQTT.....IPQTQSMAMqsatQ........SG..I..QQNPLNS...........VQ..QSvQSL.........LQ
  310-  389 (58.09/11.08)	PTQsvvrqqQH....PQSMHQQpslQ...QTQPTQQPN.IPLQQQPQQLM....G........QQsnL..QQNQLMN....QQsgaveMQ..QQ.QRLpvqsnnllnMQ
  390-  433 (53.65/ 9.49)	QTQ..qmmnQQ....SMPLHQP...Q...QLANQGNMS.SLHQQQQ..............................Q....NQ.....QQ..QQ.QQL.........L.
  434-  480 (49.42/ 7.96)	GTA.....pNV....RMHMLQQ...QkpiQQPQQQQHA.Q...QTSMGLM....Q........PQ..S..QQNQLQQ....PQ..........................
  697-  759 (45.26/ 6.46)	NTG......VQ....TSGAPGI...Q...HVPAPQATN.FGVPTTQQNVT....NapqagsnlEN..A..QGNSF.N....P......VQhgSM.GTA.........LQ
  760-  817 (48.13/ 7.50)	QGS....tgPM....QGALNAQ...Q...QSSSNMISN.NAMSTMQTNTN....A........MQ..A..NANSLQQ....LK.....QQ.hQE.HQM.........MQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     109.99|      28|      28|     894|     921|       2
---------------------------------------------------------------------------
  871-  894 (32.17/ 7.90)	VRQGAA..........IKSGMYQQLS..QRNYYHQQ
  895-  922 (48.25/15.72)	IKQGGVF........PISSPQNLQASSPQISHHSPQ
  923-  953 (29.57/ 6.63)	VDQHSLLqsqvktgtPLHS.....ANSPFVPSPSPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     116.53|      25|      56|     991|    1015|       6
---------------------------------------------------------------------------
  991- 1015 (40.25/29.53)	SIAVNTPG..ISAS..PLLAEFTSADGSQ
 1017- 1043 (26.71/16.48)	NLPTQVPT..KSAAerPLDRLLKALRTTQ
 1048- 1074 (27.09/16.84)	SAAVSDIGsvVSMI..DRIAGSAPGNGSR
 1081- 1100 (22.49/12.41)	LVAMTKCR..LQAR......NFITHDGS.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.07|      13|      16|     553|     566|       7
---------------------------------------------------------------------------
  553-  566 (18.50/16.98)	EELYQMIkSLKDQY
  571-  583 (23.56/15.77)	NDLYNKI.SMKIQH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.73|      27|     142|     955|     990|      13
---------------------------------------------------------------------------
  957-  990 (38.24/41.64)	SPMPvdsdkpLsNLSSLTSAGQAHQQ..TSLAPQTQ
 1111- 1139 (42.49/19.68)	SAMP......L.NVSSAGSVNDSLKQsyTVGTPELQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25959 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FPISSPQNLQASSPQISHHSPQVDQHSLLQSQVKTGTPLHSANSPFVPSPSPPVAPSPMPVDSDKPLSNLSSLTSAGQAHQQTSLAPQTQSIAV
2) KQYVQAQRGLQEAPSTSVDSTAQTGHPGGDLQEEL
3) MDGGANWRPTQGADPAAVAAAGGVDPNAAAPAGSDWRTQLQPEARHRIVNKI
4) PVQAPGQQIFQQSGGQAPSSNISQQHQTSQGLQQHDSHTNQMPQASIPSMNTGVQTSGAPGIQHVPAPQATNFGVPTTQQNVTNAPQAGSNLENAQGNSFNPVQHGSMGTALQQGSTGPMQGALNAQQQSSSNMISNNAMSTMQTNTNAMQANANSLQQLKQQHQEHQMMQSQQMKQRQQMMHQIQQKQMLQQQLPIQQLQKQQQQGQMPVPQLHSGNDVNELKVRQGAAIKS
5) QKLQQNSLMQPHIQQQQTLLQSTQMQSSQQSMMQMSSGLQPGQTTIPQTQSMAMQSATQSGIQQNPLNSVQQSVQS
6) QPTQSVVRQQQHPQSMHQQPSLQQTQPTQQPNIPLQQQPQQLMGQQSNLQQNQLMNQQSGAVEMQQQQRLPVQSNNLLNMQQTQQMMNQQSMPLHQPQQLANQGNMSSLHQQQQQNQQQQQQQLLGTAPNVRMHMLQQQKPIQQPQQQQHAQQTSMGLMQPQSQQNQLQQPQQHMMSQFQSQPNQVQQQLGMQQ
7) RKISLKMLSMESQTKTQQNAGSAQVIPNQNPPGPAPGLPPQGSNPAQSSAIPLMSQQQTRQPNASTSVQGSLPSQTSTLQNLSGLPQNTMNNGLAQGTPQDMYAAQRQMAGRQQQQQQQQQAHNQLIYQQQK
8) SADGSQVNLPTQVPTKSAAERPLDRLLKALRT
901
521
1
647
230
309
94
1010
994
555
52
879
305
502
225
1041










Molecular Recognition Features






MoRF SequenceStartStop




NANANA