<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25954

Description Uncharacterized protein
SequenceMDRGQRLGRALDAFGGDMWALVDAALDAAARDRPDDLRARRDGIVERLYAAATAGCSNCAGRPPPLAALAAAGLDEEDGEEAAPASSAVALEAEADAQAGGAEERAEELGAGAPGLESKIVAIRDFLDDPNQPEDELVRLLQSLADMDVTYSALQETDIGRQVNGLRKHSSAEVRRLVKQLIRKWKEIVDEWVRLHNSGSDGSATVMTADGDSPDKIQGRSHQSPRVSGFQYSPSPQRQNGSASERAINGFDSTMDAKRRASPVPAHHNSKQMNNNHNSATTTSSAPAKVTREQRQSLLDLDKLDSARKRLQENYQEAQNAKKQRTIQVMDINDIPKPKNRNAFIRKSASSGLPARNR
Length358
PositionUnknown
OrganismSorghum bicolor (Sorghum) (Sorghum vulgare)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Sorghinae> Sorghum.
Aromaticity0.03
Grand average of hydropathy-0.766
Instability index50.53
Isoelectric point6.14
Molecular weight38834.53
Publications
PubMed=19189423
PubMed=29161754

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25954
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     116.85|      28|      28|      57|      84|       1
---------------------------------------------------------------------------
   27-   54 (34.71/16.31)	DAAArDRPDDLRA.RRDGIVERLYAA...ATA
   57-   84 (49.57/26.34)	SNCA.GRPPPLAALAAAGLDEEDGEE...AAP
   87-  114 (32.57/14.87)	SAVA.LEA...EADAQAGGAEERAEElgaGAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.73|      26|      28|     194|     219|       2
---------------------------------------------------------------------------
  194-  219 (45.90/26.66)	RLHN....SGSDGSATVMTADGDSPDK.IQG
  220-  250 (37.83/20.81)	RSHQsprvSGFQYSPSPQRQNGSASERaING
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.01|      15|     152|     142|     156|       4
---------------------------------------------------------------------------
  142-  156 (27.81/20.15)	QSLADMDVTYSA...LQE
  296-  313 (21.20/13.74)	QSLLDLDKLDSArkrLQE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25954 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AALAAAGLDEEDGEEAAPASSAVALEAEADAQAGGAEERAEELGA
2) HNSGSDGSATVMTADGDSPDKIQGRSHQSPRVSGFQYSPSPQRQNGSASERAINGFDSTMDAKRRASPVPAHHNSKQMNNNHNSATTTSSAPAKVTREQRQSLLDLDKLDSARKRLQENYQEAQNAKKQRTIQVMDINDIPKPKNRNAFIRKSASSGLPARNR
67
196
111
358










Molecular Recognition Features






MoRF SequenceStartStop




1) DLRARRDGI
2) LVKQLIRKWKEIVDE
3) RNAFIRKSASSGLPARN
36
177
341
44
191
357