<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25953

Description Uncharacterized protein
SequenceMDGGHGTRQPMSPAISASAVLPQQRQMQLHHHPARPAIADLFTLYLGMNSKQRAEDPLRESPNKLQKRVTALNRDLPPRDEQFISDYEQLRMPFPDAEQLQAVTESVLISFVLQCSSHAPQSEFLLFATRCLCARGHLRWDSLLPSLLNTVSSIEAPMVQGVSVTGGGPATPSSAITMPNAPNFHPSNPASPLSVMNTIGSPTQSGIDQPVGANVSPIKAAEFSSSAQLGTAARGDQSRRGAEASYLHHLSCRIILAGLEFNLKPATHAVIFQHMVNWLVNWDQRPHGMDEADAMQTCRLEKPLHEWMHLCLDVIWILVNEDKCRIPFYELVRCNLQFLENIPDDEALVSIIMEIHRRRDMVCMHMQMLDQHLHCPTFGTHRFLSQSYPSIAGESVTNLRYSPITYPSVLGEPLHGEDLANSIPKGGLDWERALRCLRHALRTTPSPDWWRRVLLVAPCYRSQSQQSSTPGAVFSPDMIGEAVADRTIELLRLTNSETQCWQDWLLFADIFFFLMKSGCIDFLDFVDKLASRVTNSDQQILRSNHVTWLLAQIIRIEIVMNTLSSDPRKVETTRKIISFHKEDKSLDANNIGPQSILLDFISSSQTLRIWSFNTSIREHLNSDQLQKGKQIDEWWKQMTKASGERMIDFTNLDERATGMFWVLSFTMAQPACEAVMNWFTSAGMADLIQGPNMQPSERIMMMRETYPLSMSLLSGLSINLCLKLAFQLEETIFLGQAVPSIAMVETYVRLLLIAPHSLFRPHFTTLTQRSPSILSKSGVSLLLLEILNYRLLPLYRYHGKSKALMYDVTKIISMIKGKRGEHRLFRLAENLCMNLILSLKDFFFVKKELKGPTEFTETLNRITIISLAITIKTRGIAEVEHMIYLQPLLEQIMATSQHTWSEKTLRYFPPLIRDFLMGRMDKRGQAIQAWQQAETTVINQCNQLLSPSAEPNYVMTYLSHSFPQHRQYLCAGAWMLMNGHLEINSANLARVLREFSPEEVTANIYTMVDVLLHHIQFEVQRQHLAQDLLSKAITNLSFFIWTHELLPLDILLLALIDRDDDPYALRLVISLLEKPELQQRVKNFCNTRSPEHWLKNQHPKRAELQKALGSHLSWKDRYPPFFDDIAARLLPVIPLIIYRLIENDATDIADRVLAFYSSLLAFHPLRFTFVRDILAYFYGHLPIKLIGRILNLLGVSTKTPFSESFAKYLVSSNSSVCPPPEYFANLLLNLVNNVIPPLSSKSKSNPADTTRSTFNKHHASSQPGGVGNTDGQRAFYQNQDPGSYTQLVLETAAIEILSLPVPAAQIVSSLVQIIAHVQAMLIQSNSGQGMSGGLGQSSGLPTSPSGAAESSGPNQANSAASGINATNFVSRSGYSCQQLSVLMIQACGLLLAQLPPEFHMQLYSEAARVIKDCWWLADSSRPVKELDSAVGYALLDPTWASQDNTSTAIGNIVALLHSFFSNLPQEWLESTHTVIKHLRPVNSVAMLRIAFRILGPLLPRLAFARPLFMKTLALLFNVLGDVFGKNPPVSNPNPVEASEIADIIDFLHHAVMYEGQGGPVQSTSKPKLEILTLCGKVIEILRPDVQHLLSHLKIDPASSIYAATHPKLVQSSS
Length1613
PositionTail
OrganismSorghum bicolor (Sorghum) (Sorghum vulgare)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Sorghinae> Sorghum.
Aromaticity0.08
Grand average of hydropathy-0.076
Instability index47.69
Isoelectric point6.86
Molecular weight180919.49
Publications
PubMed=19189423
PubMed=29161754

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of gene expression	GO:0010628	IBA:GO_Central
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25953
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     134.77|      42|     347|     277|     427|       1
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  383-  427 (63.80/171.86)	FLSQSYPSIAgESVTNLRYSPITyPSVLGEPlHGEDLANSIP....KGG
  733-  778 (70.96/ 7.53)	FLGQAVPSIA.MVETYVRLLLIA.PHSLFRP.HFTTLTQRSPsilsKSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     227.12|      64|     184|    1334|    1400|       2
---------------------------------------------------------------------------
  168-  196 (31.22/10.54)	..........................GPATPSSAITMPNAPNFHPSNPAS..PLSVM..................
  199-  263 (90.35/44.94)	IGsptqsgidQPVGANVSPIKAAEFSSSAQLGTAARGDQ.....SRRG...AEASYLHHLSCRIILAGL..EFNL
 1334- 1400 (105.55/63.79)	LG........QSSGLPTSPSGAAESSGPNQANSAASGINATNFVSRSGYScQQLSVLMIQACGLLLAQLppEFHM
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.68|      15|      15|    1205|    1219|       3
---------------------------------------------------------------------------
 1205- 1219 (28.14/15.87)	FAKYLVSSNSSVCPP
 1223- 1237 (26.54/14.57)	FANLLLNLVNNVIPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     136.68|      43|     183|     286|     340|       4
---------------------------------------------------------------------------
  286-  332 (65.70/86.81)	PHGMDEADAMQTCRLEKpL........HEWMhLCLDVIWILVnEDKCrIPFYELV
  476-  526 (70.97/47.42)	PDMIGEAVADRTIELLR.LtnsetqcwQDWL.LFADIFFFLM.KSGC.IDFLDFV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.66|      18|      21|    1139|    1159|       6
---------------------------------------------------------------------------
 1139- 1159 (20.59/24.12)	RLIEndATDIADrVLA.FYSSL
 1163- 1181 (28.07/17.14)	HPLR..FTFVRD.ILAyFYGHL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.86|      10|      15|     659|     668|       9
---------------------------------------------------------------------------
  659-  668 (20.76/10.65)	MFWVLSFTMA
  676-  685 (21.10/10.93)	MNWFTSAGMA
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     148.23|      44|     289|     594|     639|      10
---------------------------------------------------------------------------
  594-  639 (74.77/48.92)	QSILLDFISSSQtlRIWS......FNTSIREHLNSDQLQKGKQIDEWWKQMT
  886-  935 (73.47/42.61)	QPLLEQIMATSQ..HTWSektlryFPPLIRDFLMGRMDKRGQAIQAWQQAET
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.54|      23|     194|     826|     849|      12
---------------------------------------------------------------------------
  826-  849 (35.54/26.04)	RLAENLCMNLILSLkDFFFVKKEL
 1023- 1045 (41.00/25.62)	HLAQDLLSKAITNL.SFFIWTHEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.43|      24|     534|     997|    1020|      13
---------------------------------------------------------------------------
  997- 1020 (42.37/24.60)	PEEV.TANIYTMVDVLLHHIQFEVQ
 1532- 1556 (39.06/22.17)	PNPVeASEIADIIDFLHHAVMYEGQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.97|      32|     840|     111|     142|      19
---------------------------------------------------------------------------
  111-  142 (61.54/39.24)	FVLQCSSHA.PQSEFLLFATRCLCARGHLRWDS
  953-  985 (58.43/36.85)	YVMTYLSHSfPQHRQYLCAGAWMLMNGHLEINS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25953 with Med23 domain of Kingdom Viridiplantae
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