<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25940

Description Uncharacterized protein
SequenceMDPAAAALGAAPAAGAPPPGAAAGEQQAAPRVERLSAGVQQQLNLEGMRARAVGLYKAISRILEDFDVIARTNPSASPKWQDVLGQFSMVSMELFNIVEDIKNVSKVFVVYPRNVNAENATVLPVMLSSKLLPEMEVDETTKREQLLSGITNLPVPTQIEKLKARIEMIASACETAEKVIAECRKSYGLGTRQGTNLGPTLDKAQAAKIQEQEGLLRAAVNYGEGLRVPGDQRQPQSLPSHLIEVLPLGDGAQNFGDSSGSYPKNTSTFAPNNVNNQGNQASGGQLLGRPAPSPGTTGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTPQQQRQKLMQASQQQQLHAQQLRPSAAGMLAQSALPQLQDLQGQAQQKLQVPGQQQMQYNQALSQQFHNRQMQPGRMQPGMAQSQLNQGTQLRSHLGQFTGAANSAMFNAAQASSNSQMMANMPGSQSLMPQMQYGMAGGHPQRSHPQMLTDQMFGMGATNSSMMGMQQQQQQGVYGNMQAGAQNMQQGMVGLQNQTQNPNFTQQRQQNQQ
Length544
PositionHead
OrganismSorghum bicolor (Sorghum) (Sorghum vulgare)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Sorghinae> Sorghum.
Aromaticity0.04
Grand average of hydropathy-0.615
Instability index51.82
Isoelectric point9.13
Molecular weight58663.46
Publications
PubMed=19189423
PubMed=29161754

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
defense response to fungus	GO:0050832	IEA:EnsemblPlants
regulation of flower development	GO:0009909	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25940
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     353.50|     115|     163|     199|     361|       1
---------------------------------------------------------------------------
  261-  390 (182.22/69.99)	SYPKNTSTFAPNNVNNQGNQASGgqlLGRPAPSPGT...TGTPNFENVSTPPMPYANSPRSGTNMM.NTPSpQQHLTPQQQRQklMQASQQQQLHAQQLRPSAAGmlaqsalPQL........QDLQGQ...AQQ.......KLqvPGQQQM
  391-  529 (171.28/51.93)	QYNQALSQQFHNRQMQPGRMQPG...MAQSQLNQGTqlrSHLGQFTGAANSAMFNAAQASSNSQMMaNMPG.SQSLMPQMQYG..MAGGHPQRSHPQMLTDQMFG.....mgATNssmmgmqqQQQQGVygnMQAgaqnmqqGM..VGLQNQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.91|      22|      23|     210|     231|       2
---------------------------------------------------------------------------
  210-  231 (38.32/21.19)	QEQ..EGLLRAAVNYGEGLRVPGD
  234-  257 (34.59/18.46)	QPQslPSHLIEVLPLGDGAQNFGD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25940 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) VNYGEGLRVPGDQRQPQSLPSHLIEVLPLGDGAQNFGDSSGSYPKNTSTFAPNNVNNQGNQASGGQLLGRPAPSPGTTGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTPQQQRQKLMQASQQQQLHAQQLRPSAAGMLAQSALPQLQDLQGQAQQKLQVPGQQQMQYNQALSQQFHNRQMQPGRMQPGMAQSQLNQGTQLRSHLGQFTGAANSAMFNAAQASSNSQMMANMPGSQSLMPQMQYGMAGGHPQRSHPQMLTDQMFGMGATNSSMMGMQQQQQQGVYGNMQAGAQNMQQGMVGLQNQTQNPNFTQQRQQNQQ
220
544










Molecular Recognition Features






MoRF SequenceStartStop




NANANA