<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25938

Description Uncharacterized protein
SequenceMAVVSARGSPNSFPSPRLPPSPQPRPDAERMFMRGGSSRSTGTSGSLRSASLRDIDEEAAVVVADDDGGGGKLYVAVGKDRKDGKSNVSAAQSLGLVGGDLKLVLLHVHQPADRIMNGLGCKVLASQLEEKELKAYRQIEQEEMDRLLNTYVNHCRSYLKVEAETLIIEKNNVANGIVELINQHRITKLVMGMSSFSTKRKVPKSKVAAIVHQQAKPYCQIFFICKGSLGCTRDANLGCTKADSPRSSSASTLSDETEIPTRSVSLPPGHPGYRGSPDESFLPRRSHSVSYPSSGLITNVERMSPIAPQSIHVKTTYCSPNSSLPSNEGSSSSSLKDSDSLDGSPVPASIISYEEQQMSMVENGMHNEVFERLQQARTELERSRKEACEGRQKAERDLFEASMKSKARENSLHKEKKEVEEKLTKEKSILEKEKLQIYNELQKANEQRAQLENKLLQTNSLLEELQQLQGELQREKEDALREVEEMCKLYCNRNFASAGEVSLTEFSYSEIEEATNNFDGSREIGQGGCASVYRGFLRHTTVAIKKFNREGAVGEKEFNDEVEILCRMRHPNLATLIGLCRDPKVLVYEFMPNGSLEDRLQCKLHTEPLPWRMRVRIAADICTALIFLHSNKPKSIAHGDLKPDNVLLDANFVGKLGDFGISRSLDLTNTTVTPYHRTDHIKGTLGYMDPGYIASGELTAQYDVYSFGVVLLRLLTGKSPLGLQSEVEASMSSGVLHEILDASAGEWPLEHAEELARLALKCCRLNRKDRPDLAKEAWGILQAMMNEPPPSSAHPPKAEAPSYFICPMTQEIMRDPHIAADGFTYEGDAIKDWIQRGHTMSPMTYLNLSHHELIPNNALRFAIQEWQMGQQQ
Length872
PositionTail
OrganismSorghum bicolor (Sorghum) (Sorghum vulgare)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Sorghinae> Sorghum.
Aromaticity0.06
Grand average of hydropathy-0.516
Instability index47.71
Isoelectric point6.17
Molecular weight96877.72
Publications
PubMed=19189423
PubMed=29161754

Function

Annotated function Functions as an E3 ubiquitin ligase. 
ECO:0000256	ARBA:ARBA00003861
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25938
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      93.70|      25|      26|     272|     296|       1
---------------------------------------------------------------------------
  272-  296 (46.48/26.26)	GYRGSPDESFLPRRSH.SVS.Y..PSSGL
  302-  324 (21.59/ 8.38)	..RMSP...IAPQSIHvKTT.YcsPNSSL
  326-  349 (25.63/11.28)	SNEGSSSSSLKDSDSL.DGSpV..PAS..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.82|      25|      26|      47|      71|       2
---------------------------------------------------------------------------
   43-   68 (35.46/27.23)	TSGsLRSASLRD.IDEEAAVVVADDDG
   69-   95 (33.36/25.12)	GGGkLYVAVGKDrKDGKSNVSAAQSLG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.52|      23|      48|     365|     412|       4
---------------------------------------------------------------------------
  382-  408 (29.04/45.54)	RSRKEACEGRQKaERDLFEasmKSKAR
  414-  436 (35.47/21.27)	KEKKEVEEKLTK.EKSILE...KEKLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.53|      27|      90|     354|     381|       5
---------------------------------------------------------------------------
  354-  381 (43.74/29.44)	EEQQMSMvENGM..HNEVFERLQQARTELE
  445-  473 (39.79/22.31)	NEQRAQL.ENKLlqTNSLLEELQQLQGELQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     212.24|      71|     454|     118|     230|      10
---------------------------------------------------------------------------
  148-  230 (107.53/121.66)	LNTYVNHCRsylkvEAETLIIEknNVANGIVELINQ...H..........RITKLVMGMSSFSTKRKvPKSkvaaIVHQQAKPYCQIF...FICK.GSLG
  573-  660 (104.71/49.74)	LATLIGLCR.....DPKVLVYE..FMPNGSLEDRLQcklHteplpwrmrvRIAADICTALIFLHSNK.PKS....IAHGDLKPDNVLLdanFVGKlGDFG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25938 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KTTYCSPNSSLPSNEGSSSSSLKDSDSLDGSPVPASIISYEEQQMSMVENGMHNEVFERLQQARTELERSRKEACEGRQKAERDLFEASMKSKARENSLHKEKKEVEEKLTK
2) TKADSPRSSSASTLSDETEIPTRSVSLPPGHPGYRGSPDESFLPRRSHS
3) VVSARGSPNSFPSPRLPPSPQPRPDAERMFMRGGSSRSTGTSGSLRSA
314
240
3
425
288
50










Molecular Recognition Features






MoRF SequenceStartStop




NANANA