<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>
Description
Uncharacterized protein Sequence MAAVKASEARGDPPLLRAVELSRVVAGEGAGAGPLPSADLAGILVSNLCFAHNSPSLWKLLGQAVACRLLCPLHVLALLTPRVLPQRRAQPEAYRLYLELLKCHVTSSLLSMEAGPNRDKIGKSIAEALQLSKVYGFSGTEFGHVVIMFVLTVVNKLIDSILEDCGLPSAMAEGQESVYATDGPQPMDLDVKRGSTENQNEHREQLRRKNTLMALDVLHMMAADRKIQSFLRLIFLNMPEKFSSLRQRLSSIEAHKVSLETLLPSGHKISDLLINIWRVCKTDYQPNNKRILGILGNMGSSGSLLGQLTGAGRPACWIIFDIYVENAIDGRHLNLISAIGIIKEMTKTMQVLNEASWQETFKALWVSALRLVQRAREPLEGPIPHLDSRLCMLLSLIPLAVAEILQEESDMLGAEGNKILPQRQGLISSLQDLIQYSGLLVPPSSVVNAANAAASKAAIFKANYKAGVGNSSMMDQTDSSMKAAGNMLHLIIEACISRKLIDTSAYLWPGYVVPSGTLKDTALPQESPWLNFMKGARLSGPLIDALVATPASSVAELDKLYSIATNGSEEEKTAAAKILCGASLVRGWNIQEHVVGMVVKLLSASLPSDSSTSTPGSMSHYLAHMSTLNEILLGVSYGDAIHILSLYGMVPDVAVALMPLCEAFGSIAPPPNHKSTILGETSVYSVFSCAFLCLLRLWKFYRPPQEYCLAGRGGSVKLELTLDYLLLMRNKGIEFSNSSAPNRASYNNMGSVNEVPAQPIYIDSFPKLRAWYFQNQACIASTLSGLCNKNPVHQVANKILNMICRKMNKSGVSSSNLSSTSSSSVSGSSVSASDDSCQRPAVPAWEFLEAVPFVLEAVLTACAHGRLSSRDLTTSLRDLVDFLPASLAAIVSYFSAEITRGIWKPVPMNGIEWPSPGASLHSIEAEVKEILASAGVQINSCYPRGVPPMLPLPMAALVSLTITFKLDRSLEYIQGVTGQALENCAGGSSWPSMPIIGALWTQKVRRWHDFIVLSCMRSPFGTDKDAVAQLIQSCFSSFLQSSPSGSDIIANRGVGALLGDSITNQGLRLPMAPGFIYLRTCRTFHDTYFVSEVILKQVIEWSHKLANGWSFNGPPQLKSGRTPLSCAASMAHQVALLGGGLLCIAGGPLVVQVLYEETLPTLLLSAREQSLKGPGPVSSTLQGYAMANMLFYSGSLLWGADRTDPVMKLSFLWRRPRVVRKHMDFIAGVLDGHILLGCDPGTWKAYVSQFMFLVVKFVPSWLRDIKLETLKKIAAGLRSWHEHDLALSLLERGGPQAISLVVEAFM Length 1306 Position Tail Organism Sorghum bicolor (Sorghum) (Sorghum vulgare) Kingdom Viridiplantae Lineage Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta>
Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade>
Panicoideae> Andropogonodae> Andropogoneae> Sorghinae> Sorghum.
Aromaticity 0.07 Grand average of hydropathy 0.141 Instability index 48.94 Isoelectric point 8.37 Molecular weight 141696.92 Publications PubMed=19189423
PubMed=29161754
Function
Annotated function
GO - Cellular Component mediator complex GO:0016592 IEA:InterPro
GO - Biological Function GO - Biological Process regulation of phenylpropanoid metabolic process GO:2000762 IEA:InterPro
Interaction
Repeat regions
Repeats
>MDP25936
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 920.04| 300| 335| 465| 796| 1
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465- 796 (460.14/366.11) KAGVGNSSMMDQTDSSMkaAGNMLHLIIEACiSRKLIDTSAYLWPGYVVPSGTLKDTALPQESPwLNFMKGARlsgPLIDALVATPASSV....AELDK.LYS.IATNGSEEEKTaaakilcGASL..VRGwNIQEHVVGMVVKlLSASLPSDSSTSTPGSMSHYLAHMSTLN.....EILLGVSyGDAIHILSLYGMVPDvavalMPLCEAFGSIAPPPNHKSTILG.ETSVYSVFSCAFLCLLR..LWKFYR..PPQEYCLAGRG.GSvkleLTLDYlllMRNKGIEFsnSSAPN....RA..SYNNMGSVNEVPAQPIyIDSFPKL.RAWYFQNQACIASTLSGL.CNKNPVHQVA
809- 1135 (459.90/286.59) KSGVSSSNLSSTSSSSV..SGSSVSASDDSC.QRPAVPAWEFLEAVPFVLEAVLTACAHGRLSS.RDLTTSLR...DLVDFLPASLAAIVsyfsAEITRgIWKpVPMNGIEWPSP.......GASLhsIEA.EVKEILASAGVQ.INSCYPRGVPPMLPLPMAALVSLTITFKldrslEYIQGVT.GQALENCAGGSSWPS.....MPIIGALWTQKVRRWHDFIVLScMRSPFGTDKDAVAQLIQscFSSFLQssPSGSDIIANRGvGA....LLGDS...ITNQGLRL..PMAPGfiylRTcrTFHDTYFVSEVILKQV.IEWSHKLaNGWSFNGPPQLKSGRTPLsCAASMAHQVA
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 131.20| 39| 335| 44| 88| 2
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44- 88 (64.33/55.24) LVSNLCFahnspsLWKLLGQAVACRLLCPLHVLALLTPRVLPQRR
386- 424 (66.87/43.19) LDSRLCM......LLSLIPLAVAEILQEESDMLGAEGNKILPQRQ
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 145.91| 46| 989| 227| 275| 3
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227- 275 (68.77/52.95) IQSFLRLIFLnmpEKFSSLRQRLSSIEAHKVSLETLLPSGHKISDLLIN
1258- 1303 (77.14/50.20) VPSWLRDIKL...ETLKKIAAGLRSWHEHDLALSLLERGGPQAISLVVE
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 91.00| 28| 989| 157| 186| 4
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157- 186 (44.62/36.02) LIDSILEDCGLPSAMAEGQESvyATDGPQP
1149- 1176 (46.38/30.10) LVVQVLYEETLPTLLLSAREQ..SLKGPGP
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Explaination for Stockholm format The "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column. It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column. This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.#=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.
Alignment of MDP25936 with Med33 domain of Kingdom Viridiplantae
Intrinsically Disordered Regions
IDR Sequence Start Stop
NA NA NA
