<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25936

Description Uncharacterized protein
SequenceMAAVKASEARGDPPLLRAVELSRVVAGEGAGAGPLPSADLAGILVSNLCFAHNSPSLWKLLGQAVACRLLCPLHVLALLTPRVLPQRRAQPEAYRLYLELLKCHVTSSLLSMEAGPNRDKIGKSIAEALQLSKVYGFSGTEFGHVVIMFVLTVVNKLIDSILEDCGLPSAMAEGQESVYATDGPQPMDLDVKRGSTENQNEHREQLRRKNTLMALDVLHMMAADRKIQSFLRLIFLNMPEKFSSLRQRLSSIEAHKVSLETLLPSGHKISDLLINIWRVCKTDYQPNNKRILGILGNMGSSGSLLGQLTGAGRPACWIIFDIYVENAIDGRHLNLISAIGIIKEMTKTMQVLNEASWQETFKALWVSALRLVQRAREPLEGPIPHLDSRLCMLLSLIPLAVAEILQEESDMLGAEGNKILPQRQGLISSLQDLIQYSGLLVPPSSVVNAANAAASKAAIFKANYKAGVGNSSMMDQTDSSMKAAGNMLHLIIEACISRKLIDTSAYLWPGYVVPSGTLKDTALPQESPWLNFMKGARLSGPLIDALVATPASSVAELDKLYSIATNGSEEEKTAAAKILCGASLVRGWNIQEHVVGMVVKLLSASLPSDSSTSTPGSMSHYLAHMSTLNEILLGVSYGDAIHILSLYGMVPDVAVALMPLCEAFGSIAPPPNHKSTILGETSVYSVFSCAFLCLLRLWKFYRPPQEYCLAGRGGSVKLELTLDYLLLMRNKGIEFSNSSAPNRASYNNMGSVNEVPAQPIYIDSFPKLRAWYFQNQACIASTLSGLCNKNPVHQVANKILNMICRKMNKSGVSSSNLSSTSSSSVSGSSVSASDDSCQRPAVPAWEFLEAVPFVLEAVLTACAHGRLSSRDLTTSLRDLVDFLPASLAAIVSYFSAEITRGIWKPVPMNGIEWPSPGASLHSIEAEVKEILASAGVQINSCYPRGVPPMLPLPMAALVSLTITFKLDRSLEYIQGVTGQALENCAGGSSWPSMPIIGALWTQKVRRWHDFIVLSCMRSPFGTDKDAVAQLIQSCFSSFLQSSPSGSDIIANRGVGALLGDSITNQGLRLPMAPGFIYLRTCRTFHDTYFVSEVILKQVIEWSHKLANGWSFNGPPQLKSGRTPLSCAASMAHQVALLGGGLLCIAGGPLVVQVLYEETLPTLLLSAREQSLKGPGPVSSTLQGYAMANMLFYSGSLLWGADRTDPVMKLSFLWRRPRVVRKHMDFIAGVLDGHILLGCDPGTWKAYVSQFMFLVVKFVPSWLRDIKLETLKKIAAGLRSWHEHDLALSLLERGGPQAISLVVEAFM
Length1306
PositionTail
OrganismSorghum bicolor (Sorghum) (Sorghum vulgare)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Sorghinae> Sorghum.
Aromaticity0.07
Grand average of hydropathy0.141
Instability index48.94
Isoelectric point8.37
Molecular weight141696.92
Publications
PubMed=19189423
PubMed=29161754

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25936
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     920.04|     300|     335|     465|     796|       1
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  465-  796 (460.14/366.11)	KAGVGNSSMMDQTDSSMkaAGNMLHLIIEACiSRKLIDTSAYLWPGYVVPSGTLKDTALPQESPwLNFMKGARlsgPLIDALVATPASSV....AELDK.LYS.IATNGSEEEKTaaakilcGASL..VRGwNIQEHVVGMVVKlLSASLPSDSSTSTPGSMSHYLAHMSTLN.....EILLGVSyGDAIHILSLYGMVPDvavalMPLCEAFGSIAPPPNHKSTILG.ETSVYSVFSCAFLCLLR..LWKFYR..PPQEYCLAGRG.GSvkleLTLDYlllMRNKGIEFsnSSAPN....RA..SYNNMGSVNEVPAQPIyIDSFPKL.RAWYFQNQACIASTLSGL.CNKNPVHQVA
  809- 1135 (459.90/286.59)	KSGVSSSNLSSTSSSSV..SGSSVSASDDSC.QRPAVPAWEFLEAVPFVLEAVLTACAHGRLSS.RDLTTSLR...DLVDFLPASLAAIVsyfsAEITRgIWKpVPMNGIEWPSP.......GASLhsIEA.EVKEILASAGVQ.INSCYPRGVPPMLPLPMAALVSLTITFKldrslEYIQGVT.GQALENCAGGSSWPS.....MPIIGALWTQKVRRWHDFIVLScMRSPFGTDKDAVAQLIQscFSSFLQssPSGSDIIANRGvGA....LLGDS...ITNQGLRL..PMAPGfiylRTcrTFHDTYFVSEVILKQV.IEWSHKLaNGWSFNGPPQLKSGRTPLsCAASMAHQVA
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     131.20|      39|     335|      44|      88|       2
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   44-   88 (64.33/55.24)	LVSNLCFahnspsLWKLLGQAVACRLLCPLHVLALLTPRVLPQRR
  386-  424 (66.87/43.19)	LDSRLCM......LLSLIPLAVAEILQEESDMLGAEGNKILPQRQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     145.91|      46|     989|     227|     275|       3
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  227-  275 (68.77/52.95)	IQSFLRLIFLnmpEKFSSLRQRLSSIEAHKVSLETLLPSGHKISDLLIN
 1258- 1303 (77.14/50.20)	VPSWLRDIKL...ETLKKIAAGLRSWHEHDLALSLLERGGPQAISLVVE
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.00|      28|     989|     157|     186|       4
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  157-  186 (44.62/36.02)	LIDSILEDCGLPSAMAEGQESvyATDGPQP
 1149- 1176 (46.38/30.10)	LVVQVLYEETLPTLLLSAREQ..SLKGPGP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25936 with Med33 domain of Kingdom Viridiplantae
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