<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25934

Description Uncharacterized protein
SequenceMTSSAPPNPSPVPVPVPVPTPIPTANGTASPPKEQPPPPPQQQQQQGGGQEEAAAADGGGAEAAEAGVAAGVAPEAMEVDGGSGAGDAEVGGSVGGGGGGGAGAGGGAQQASPATVFRIRLKQSPASLRHKMRVPELCRNFSAVAWCGKLNAIACASETCARIPSSNSSPPFWIPIHILNPERPTECSVFNVKADSPRDFVQFIEWSPRSCPRALLVANFHGRITIWTQPTKGPVNLVRDASSWQCEHEWRQDLSVVTKWLSGISPYRWLPTNSTSSNLKTFEEKFLTQQPQSSVGWPSILCVCSVFSSGSVQLHWSQWPSQNSAHPRWFSTSKGLLGAGPSGIMAADAIVTESGALHVAGVPLVNPSTVVVWEVMPGHGNGIQATAKINATSSVPPSLNPPSWPGFAPLAAYLFSLQDYLVSEGAQTKKLTDNETTEAASIHCCPVSNFSAYVSPEAAAQSATTTTWGSGVTSVAFDPTRGGSVITVVIVEGQYMSPYDPDEGPSITGWRVQCWESSRQPVVLHPIFGSPTSLGGQPPMQTVWSTRVNKSIPPTEDLKNPQTYVPMPTTSDERSSSECSVDRANRLSFDPYDLPNDVRQLAQIVYSAHGGEVAVAFLRGGVHIFSGPNFDQVDSYHVNVGSAIAPPAFSSSSCCLASVWHDTLKDRTILKIIRVLPPAILSTQTKISSAAWERAIADRFWWSLLAGVDWWDAVGCTQSAAEDGIVSLNSVIAFLDADFHSLPTMQQRQQHCPNLDRIKCRLLEGTNAQDVRALVLDMQARLLLDMLGKGIESALTNPSTLLPEPWQASSDMLSSIEPDKMTVEPALLPSIQGYVDAVLDLASHFITRLRRYASFCRTLASHVGPSSTTGASRNMVTSPTNSSPSPSNNQGNQGGSTTSATGNSQMQEWVQGAIAKISNNSDGAVTATQNQMSTRSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCLLFRRRQSPRLLANLQKNQDSAIQKIQHMMNAKTEDNSTTVRSGLGAAKVEDGQSTRGGQFVLGTKGPEENPIGKSVRIGSGNAGQGYTSDEVKVLFLILVDLCRRTSTLPHPLPASQVGSSSIIIRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELQPPAEEWHRRNMFGGPWSEPDDFGPLDNMPRLKISGSINSHLSDMEEDAGSSVGIHSLWPRKRRLSERDAAFGLKTSVGLGGYLGVMGSRRDVVTAVWRTGLDGEWYKCIRCLRQTCAFAHPGAPNQTNEREAWWISRWSHACPMCGGSWVKVV
Length1298
PositionTail
OrganismSorghum bicolor (Sorghum) (Sorghum vulgare)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Sorghinae> Sorghum.
Aromaticity0.07
Grand average of hydropathy-0.241
Instability index51.38
Isoelectric point6.44
Molecular weight139270.49
Publications
PubMed=19189423
PubMed=29161754

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
circadian regulation of gene expression	GO:0032922	IEA:EnsemblPlants
positive regulation of plant-type cell wall cellulose biosynthetic process	GO:2001011	IEA:EnsemblPlants
positive regulation of systemic acquired resistance	GO:1901672	IEA:EnsemblPlants
regulation of cell wall pectin metabolic process	GO:1902066	IEA:EnsemblPlants
regulation of ethylene-activated signaling pathway	GO:0010104	IEA:EnsemblPlants
regulation of jasmonic acid mediated signaling pathway	GO:2000022	IEA:EnsemblPlants
regulation of long-day photoperiodism, flowering	GO:0048586	IEA:EnsemblPlants
regulation of transcription, DNA-templated	GO:0006355	IBA:GO_Central
response to osmotic stress	GO:0006970	IEA:EnsemblPlants
root development	GO:0048364	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25934
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.75|      20|      40|      37|      74|       1
---------------------------------------------------------------------------
   52-   71 (35.42/28.66)	EAAAADGG.GAEAAEAGVAAG
   75-   95 (32.33/14.99)	EAMEVDGGsGAGDAEVGGSVG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     158.45|      39|      40|     311|     350|       2
---------------------------------------------------------------------------
  311-  340 (48.64/21.64)	.............SV..QLHWSQWPSQNSAHPRWFSTSKGLLGAG
  342-  380 (54.93/27.23)	SGIMAADAI.vteSG..ALHVAGVPLVN...PSTVVVWEVMPGHG
  381-  425 (54.88/22.98)	NGIQATAKInatsSVppSLNPPSWPGFAPLAAYLFSLQDYLVSEG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.01|      16|      40|     453|     468|       3
---------------------------------------------------------------------------
  453-  468 (28.59/14.11)	YVSPEAAAQSATTTTW
  495-  510 (33.42/17.79)	YMSPYDPDEGPSITGW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.55|      26|      41|    1053|    1093|       4
---------------------------------------------------------------------------
  570-  595 (47.76/15.67)	TSDE.RSSSECSVDRANRLSFDPYDLP
 1062- 1088 (42.79/22.48)	TSDEvKVLFLILVDLCRRTSTLPHPLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     141.21|      37|      41|    1161|    1197|       5
---------------------------------------------------------------------------
 1119- 1155 (36.70/18.29)	......LGPhMQNMPRPRGADAAGLLLRELElqppaEEWHRRN
 1161- 1197 (64.82/38.27)	WSEPDDFGP.LDNMPRLKISGSINSHLSDME.....EDAGSSV
 1203- 1231 (39.69/20.41)	WPRKRRLSE.RDAAFGLKTSVGLGGYLGVM.............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.86|      29|      41|     861|     899|       6
---------------------------------------------------------------------------
  861-  891 (48.32/47.18)	SHVGPSS..TTGASRNMVTspTNSSPSP.SNNQG
  915-  946 (40.54/16.29)	AKISNNSdgAVTATQNQMS..TRSSFMPiSINTG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.90|      13|     115|     844|     856|       7
---------------------------------------------------------------------------
  844-  856 (26.05/17.34)	HFITRLRRYASFC
  961-  973 (26.85/18.08)	HFLHRLCQLLLFC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.93|      24|      41|     102|     127|       8
---------------------------------------------------------------------------
  102-  127 (37.24/26.16)	AGAGGGAQQA...SPATVFRIrlKQSPAS
  143-  169 (38.69/21.14)	AVAWCGKLNAiacASETCARI..PSSNSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.79|      29|      46|     172|     206|       9
---------------------------------------------------------------------------
  172-  202 (48.39/28.01)	FWIPIHILNpeRPTECSVFNVKADSPRDFVQ
  220-  248 (52.40/28.91)	FHGRITIWT..QPTKGPVNLVRDASSWQCEH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.47|      12|      19|    1026|    1040|      12
---------------------------------------------------------------------------
 1026- 1040 (18.24/17.46)	GQSTRGGQfvlGTKG
 1047- 1058 (22.23/11.70)	GKSVRIGS...GNAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.67|      15|     115|     615|     632|      15
---------------------------------------------------------------------------
  615-  630 (22.72/17.91)	VAFLRGGVHIfSGPNF
  635-  649 (26.95/ 9.56)	SYHVNVGSAI.APPAF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     183.40|      52|     579|     659|     714|      17
---------------------------------------------------------------------------
  659-  714 (86.92/51.06)	VWHDTLkDRTILKIIRVLPPAILSTQTKISSAAWERaiaDRFW...WSL...LAGVDWWDAV
 1241- 1298 (96.48/47.54)	VWRTGL.DGEWYKCIRCLRQTCAFAHPGAPNQTNER...EAWWisrWSHacpMCGGSWVKVV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25934 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MTSSAPPNPSPVPVPVPVPTPIPTANGTASPPKEQPPPPPQQQQQQGGGQEEAAAADGGGAEAAEAGVAAGVAPEAMEVDGGSGAGDAEVGGSVGGGGGGGAGAGGGAQQASPATVFRIR
2) PPMQTVWSTRVNKSIPPTEDLKNPQTYVPMPTTSDERSSSECS
3) SSTTGASRNMVTSPTNSSPSPSNNQGNQGGSTTSATGNSQ
1
538
866
120
580
905










Molecular Recognition Features






MoRF SequenceStartStop




1) VFRIRLK
116
122