<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25931

Description Uncharacterized protein
SequenceMQRYAGNSAGFSSGRDAARSESSPFSSSSSGYPVSSRRQQQLAPYKLKCDKEALNNKLGPPDFYPQTPNCPEETLTKEYAQAGYKETVEGIEEAREIVLSQIPYFCKPDAIIKCKEALKKRLRAINESRAQKRKAGQVYGVPLSGSLLIKPGVYPEQRPCNEDARRKWAEALAQPNKRLRSLSEHVPHGYRRKSLFEGLIRYNVPLLRATWFIKVTYLNQLQTRQTPNSISVAASDNQRSNQWTKDVVEYLQQILDEFCSKEGAVVPPSFREQSSPGLTAGTNQIKIKTEASPAAGDSEEPLVHFKWRYMVRLIQWHLTEELLVPSVLIEWLSNQLQERDSVDVFELLLPIMLGLVDTITLSQTYVRMFVELLVRRLNDASVADSPKRPSVSSVIAELLRYMVLAVPDTFVSLDCFPLPSFVVPDVYGRGALLKITSGGGISSSKRRDAYRYLSCGYAVCSIQKRAYDLATVANPNLQARGAAKVVQALDKALVTGNLSVAYSSLFNDLSDALMEERWIKEVSPCLQSSLMWIGTVELSLICSIFFLCEWATCDYRDCRASPSQNVKFTGRRDLSQIHIAVSILKNKMDEMNNLSRSKSSTRVTLNTITKGSSLTDACLTAATADDSSGLRSKAKNVDDKKDTNDIFESPGPLHDIIVCWLDQHEVSSVAGFTRVDLLIVELIRNGIFFPQAYVRQLIISGITDKNDTMLDVERKRRHHRTLKQLPGSSLFDILEETRTAEEQQLYEMMSTYSSERRLVLSELSCGHSFYASGRGGYAASSCIRKQSDLPVASGGDKHGRAPEQVEDVKALLSSLLGFTYPPLVESEPGQIKTSYQESATSTLSQVETGEAKSGCEDCMRFKGQKLDDSATPFQGFPLIQSDEEDIWWVRKGTKLQESFNIEPVQKSIKQTSRGRAKVVRKTQSLAQLAAARIEGSQGASTSHVCESKVSCPHHKPNIDGDNVKDFDHTRAANLTEIGKSLKRLRLLERRSVSSWLLKSVRQLVEGNEMTAAKATNSISILSLQPDDKTASKWRLGDEELLSVLYVLDTCCDLVSGARFLVWLLAKIRGGMGSSGQPGRSSMHTRNRDHQVCQVSEALVFSSLLRYENILLATDILPDVLSALVNRNSVSATVRHPGSTAFAYVRYFLKKYRDVSGVAKWEKSFRTTCDQRLLAELDNGRSIDGDLISSSGVSAGEEIDEQVRQKLNGKSSRLVQNMKEIVQRQADEVQRSLKEKKVLAAPRNPPTFEKEDSYQIAHDIVSGLVDCIRQNGGANPDGDLSTVASAVSAIVVNAGHVIAKHLDFAGGNYQGVNSVSNSLNFVRHTLRVHINSLCLLKETLGDRFSRAFEIALAVETSAAVTAAFAPPKMHRNQFQPSPEVHDAYGNHTSDLSNSGKGFVGRAAKVSAAVSALLVGAVVHGAVSLERMVAALKIKDGLDILQLLRGLKSSTNGVSRPTGTFRIENSTEVSVHWFRILLGNCRTVYDGLIADILGDSYILALSRLQQMLPLSVIFPPAYSIFAMVLWRRYIFNREDPQLYQSLSNAISDITRHQPFREICFRNTHRLYNLLASDVGDSEFAAMLESHSPDRNSKILPFIPLRARLFLDALIDCNTPTIQGDGASEPCDPKDNELKLSERLMQLLDTLQPAKFHWQWVEMRLLLDEQALMEKVAAGKTALESLRSLSPNAEGFALSDSEKGFTEVILSRLLARPDAAPLYSEVVHLLGKLQESLVMDVKWILQGQDAILGRRSTRQQLVHIAQRKGLSTKAQVWKPWGWSSLLSDVIANKAAKRKLEVTSIEEGEVVDDTVDAKRPSKTPPHNVDRSFDAIRSINKYLTEKALAELVLPCIDRSSADIRGILSVDLIKQMGAISEHIKAIARNGAKQAGSVPLGNEVPSNKSSGRKGIRGGSPNIGRRAPVGNDPSPPSASALRAALWLRLQFIIRLLPVIMADRSMRQTLASAILGLLATRMIYEDADLPLPPTNANALRREMDSLLEPPLDVLLDRPGESLFERLLCVLHALLGSYKPSWLKSRSASRSTNRTQRDFSAFDNEAAEGLQSALDHMELPETIRRRIQAAMPLLPPSRHPSMQCQPPQLSLAALTPLQSSTSGAGPQQKSSVSWVPTNVSSRSKAALPSHDPEMEVDPWNLLEDGTSCPSTTSGSNGASGVTGDHANLKACSWLKGAVRVRRTELTYIGSLDDDS
Length2201
PositionKinase
OrganismSorghum bicolor (Sorghum) (Sorghum vulgare)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Sorghinae> Sorghum.
Aromaticity0.06
Grand average of hydropathy-0.289
Instability index50.85
Isoelectric point8.70
Molecular weight243134.17
Publications
PubMed=19189423
PubMed=29161754

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of development, heterochronic	GO:0040034	IEA:EnsemblPlants
regulation of radial pattern formation	GO:0090213	IEA:EnsemblPlants
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25931
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     102.55|      27|      50|    2082|    2109|       1
---------------------------------------------------------------------------
 2082- 2109 (48.05/31.31)	PSRHPSMQCQPPQLsLAALTPLQSSTSG
 2134- 2160 (54.51/31.62)	PSHDPEMEVDPWNL.LEDGTSCPSTTSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     153.44|      49|      50|     321|     370|       2
---------------------------------------------------------------------------
  321-  370 (78.99/64.34)	ELLVPSvLIEWLSNQLQERDSVD..VFELLLPIMLGLVDT.ITLSQTYVRMFV
  371-  422 (74.45/55.28)	ELLVRR.LNDASVADSPKRPSVSsvIAELLRYMVLAVPDTfVSLDCFPLPSFV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.03|      24|      48|    1345|    1369|       4
---------------------------------------------------------------------------
 1345- 1369 (36.02/28.71)	RAFeIALAVETSAAVTAAFAPPKMH
 1395- 1418 (38.01/25.20)	KGF.VGRAAKVSAAVSALLVGAVVH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.23|      22|      50|    1657|    1679|       8
---------------------------------------------------------------------------
 1657- 1679 (31.88/24.32)	RLLL..DEQALMEKVA..AGKTAlESL
 1705- 1730 (27.35/15.46)	RLLArpDAAPLYSEVVhlLGKLQ.ESL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.47|      29|      51|    1826|    1856|       9
---------------------------------------------------------------------------
 1826- 1856 (41.35/30.63)	AI.RSINKYLTEKALAELVlPCiDRSSA..DIRG
 1875- 1906 (42.13/22.71)	AIaRNGAKQAGSVPLGNEV.PS.NKSSGrkGIRG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     174.13|      52|      52|     780|     831|      12
---------------------------------------------------------------------------
  780-  831 (88.72/48.32)	SSCIRKQSDLP.VASGGDKHGRAPEQVEDVKALLSSLLGFTYPPLVESEPGQI
  834-  886 (85.41/46.25)	SYQESATSTLSqVETGEAKSGCEDCMRFKGQKLDDSATPFQGFPLIQSDEEDI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25931 with Med12 domain of Kingdom Viridiplantae
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