<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25927

Description Uncharacterized protein
SequenceMVGHIIDQIIQLRVEVFNKEINNKLATTEWINNGIIKLGEYEMSKMTNFLMENDEVVIGVSKVQFYRRKNWPSSWFLINMVSGLNTRSYWWVARIKSINGDWKIQWVQIIKFKEDQKGEENVNLVGVNSEELNYKFFSELSTFSSNMIIDHMVLEELNLRKVRFLKIKKSEKEVLDRFNLKLPDETGTNSLQTNVDSSLGGVHYESMLLIHNDDLLPIYNSSSSLFLKVQLVGKNEMYLKLFGNLRNLKIKSSKEYELKLNLKIDEVNNFFQVDNTVDLLSVINESKQNLLDLIFNTLNKLNELIKILDQLSRNKITILDNSMDNITIKVSDDINNLVIKLPEQADHSIQLVAKEETSWEIQLILKYLNQYLHEHKSSNILGIIKYLHEINPIINSKNVIAEQIEKMSKSTMKLANGLSKLNFDLVFFNLNHLQFIYFINSTISNMKKIQKDKILINISFKSLKFDQKKRELIKISLKDNLNPKNMKFKKLFEIMFKNINELIVNKNSTNKKNPTINIHPITTTTSIEDDLINFDANDSEDDDNEKEKEKPNDASDKEEEQQQSVFIKLNYDYLITKDNFGPIMNEITKSFIQYLQE
Length597
PositionTail
OrganismCandida tropicalis (strain ATCC MYA-3404 / T1) (Yeast)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Debaryomycetaceae> Candida/Lodderomyces clade> Candida.
Aromaticity0.09
Grand average of hydropathy-0.396
Instability index31.42
Isoelectric point6.29
Molecular weight69779.46
Publications
PubMed=19465905

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25927
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     322.88|     101|     131|     249|     379|       1
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  166-  244 (94.95/41.94)	KIKkSEKEVLDRFNLKLpDETgT...NSLQTN..VDssLGGVHYES............ML.LIHN........DDLLPIY..NSSSSLFLK...............................VQLVGKNE......MYLKlFGN
  251-  369 (131.76/113.07)	..K.SSKEYELKLNLKI.DEV.N...NFFQVDNTVD..LLSVINESKQN.........LLDLIFNTL...NKLNELIKIL..DQLSRNKITIldNSMDNITIKvsdDINNLVIklpeqadhsIQLVAKEEtsweiqLILK.YLN
  403-  504 (96.17/41.49)	QIE.KMSKSTMKLANGL.SKL.NfdlVFFNL.NHLQ..FIYFINSTISNmkkiqkdkiLINISFKSLkfdQKKRELIKISlkDNLNPKNMKF..KKLFEIMFK...NINELIV...............................
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25927 with Med14 domain of Kingdom Fungi
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