<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25921

Description Uncharacterized protein
SequenceMQFKDGGIDQRYKERMEQKANFKAANSFGSTIMNSCASNQFKSINAKFKEVSSTLDPNSASISNSFSQKSSSQQQQHQHQQQQWFQSVSELLGINVDTIQSDQDNFDTITELIKDLKNNLTEQQKVNSRLNKENNELKENNKNLEGAIFSLRKWGTERDEEMERMLNTISQCDHDMAIHEQDAISKKNELEKQIYGLKTEIFKFKETEVCLKEEIENLKKLEPELENSKLKIEELNKDIKVLENKNLNLKKIARERELKCEKLGSQLSSTRSKYSNKLRSIGIETGKTIDSLLVELKLVKGINEKLLNNSIPSPEEVNDLQTKSFDELYNYFAKETPQHYVQKVYENRYLSSLLALKQTTDSNEIHHTTIESLLKLICSYFDKFPSLTHEHVVYFRTLVNEFHKRKMLKNADIDFIKKILNTYDQMMEVATDESMLDCVAS
Length441
PositionTail
OrganismCandida tropicalis (strain ATCC MYA-3404 / T1) (Yeast)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Debaryomycetaceae> Candida/Lodderomyces clade> Candida.
Aromaticity0.07
Grand average of hydropathy-0.793
Instability index38.43
Isoelectric point6.03
Molecular weight51216.28
Publications
PubMed=19465905

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25921
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     275.49|      93|     100|     127|     225|       1
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  127-  225 (142.68/98.27)	NSRLNKEnnELKENNKNLEGAIFSLRKWGTERDEEMERMLNTISQCD.......HDMAIHEQDAI.SKKNELeKQIYGLKTeifKFKETEVCLKEEIENLK.KLEPEL
  227-  328 (132.81/76.16)	NSKLKIE..ELNKDIKVLENKNLNLKKIARERELKCEKLGSQLSSTRskysnklRSIGIETGKTIdSLLVEL.KLVKGINE...KLLNNSIPSPEEVNDLQtKSFDEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      58.72|      15|      17|      39|      53|       2
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   39-   53 (25.26/17.71)	NQFKSINAK.FKEVSS
   58-   71 (19.61/11.93)	NS.ASISNS.FSQKSS
   75-   89 (13.85/ 6.02)	QQHQHQQQQwFQSVS.
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25921 with Med2 domain of Kingdom Fungi
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