<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25863

Description ZYRO0G09768p
SequenceMSGGEELSEILSINMKLDELESKLSSGDSSKESVMGAINETKGSILPMRLKFNDFLQTMSSIDKMQEVSPDEKFLLIKSKLLELTNSMQQVSEEFTKLQPLFDTVPEYAERYGNKRYLPLETLRSATNGNGNDFSAQQLNQPNQQIPQSQQSVMESQQAQPLQQQQLQQQLQQQQQLQLQQQQLQQFQLQQQQQQQQINGNSAPSVNSVQSRKKSKSNAGTPGSNVNTPSGGVTINNVTPSSKKPRKPRQPKRTPSGLNMGMGIGSVPTPIMSSSNFTPQNVQSPAIGGGNVMSASNGNINGNGGNSVQSVNGVPPTSTMNTPMNNVMSPLGNTPSGFGLSQSHPPQPLPQQLTQQLSQQLTQQRQQQVQQQRHQQAQAQAQAQAQAQAQAQAQQQQQQQQQAQQNPSQPQYGMAPHSGQLPQAQINMNTITPANILSMNMAADNQQNWGSRGGKDFDPLDINNLDFGNLNMDFI
Length475
PositionTail
OrganismZygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / NBRC 1130 / NCYC 568 / NRRL Y-229) (Candida mogii)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Saccharomycetaceae> Zygosaccharomyces.
Aromaticity0.04
Grand average of hydropathy-0.899
Instability index66.93
Isoelectric point7.86
Molecular weight52027.10
Publications
PubMed=19525356

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25863
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.38|      16|      16|     163|     178|       1
---------------------------------------------------------------------------
  169-  185 (29.55/ 6.94)	QQLQQQQQLQlQQQQLQ
  359-  374 (29.83/ 7.08)	QQLTQQRQQQ.VQQQRH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     264.13|      55|     201|     186|     240|       2
---------------------------------------------------------------------------
  186-  235 (76.81/19.98)	.......QFQL...QQQQQQQQING.NSAPSVN..SVQSRKKSKSNAGTPGSNVNTPS.GGVTI
  236-  289 (61.51/14.38)	NNVTPssKKPR...KPRQPKRTPSGlNMGMGIG..SVPTPIMSSSNF.TP.QNVQSPAiGG...
  290-  333 (65.30/15.77)	GNVMS............ASNGNING.NGGNSVQ..SVNGVPPT.STMNTPMNNVMSPL.GN...
  409-  462 (60.51/14.02)	...QP..QYGMaphSGQLPQAQINM.NTITPANilSMNMAADNQQNWGSRGGKDFDP....LDI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      63.91|      15|      16|     100|     114|       5
---------------------------------------------------------------------------
   84-   97 (15.35/ 6.75)	.LTNSMQQVSEEFTK
  100-  114 (26.31/16.58)	PLFDTVPEYAERYGN
  119-  132 (22.25/12.94)	PL.ETLRSATNGNGN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.77|      10|      14|      40|      49|       7
---------------------------------------------------------------------------
   40-   49 (17.84/ 9.42)	ETKGSILPMR
   57-   66 (17.93/ 9.49)	QTMSSIDKMQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25863 with Med3 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) QQLQQFQLQQQQQQQQINGNSAPSVNSVQSRKKSKSNAGTPGSNVNTPSGGVTINNVTPSSKKPRKPRQPKRTPSGLNMGMGIGSVPTPIMSSSNFTPQNVQSPAIGGGNVMSASNGNINGNGGNSVQSVNGVPPTSTMNTPMNNVMSPLGNTPSGFGLSQSHPPQPLPQQLTQQLSQQLTQQRQQQVQQQRHQQAQAQAQAQAQAQAQAQAQQQQQQQQQAQQNPSQPQYGMAPHSGQLPQAQINMNTITPANILSMNMAADNQQNWGSRGGKDFDPLDINNLDFGN
2) RYLPLETLRSATNGNGNDFSAQQLNQPNQQIPQSQQSVMESQQAQPLQQQQLQQQLQQQQ
182
116
469
175










Molecular Recognition Features






MoRF SequenceStartStop




NANANA