<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25861

Description ZYRO0F08272p
SequenceMYNSNEKVPNPYQRIPQGIVQAGGQQRVQPQQQPQQGFSGRSLWQNQGSHQFNQQQSSVLGMKSTSGRNVHGKQPMLMANNDVFSIGPYKARKDSTRVSVLDKYEIIGYIAAGTYGKVYKARRRAISKDDDTSIDPVNTEMNGSDLGGLQTRQSMLAESNSHPDAEIVNRSVRTSESEINGLRTSDSGILSANNTHSPIGTHGSNGTLTPKGAIFRKKASPVYYAIKKFKTERDGVEQTHYTGISQSACREMALCRELDNKHLTQLTEIFLERKSIYMVYEFAEHDLLQIIHFHSHPEKRMIPQKMIGSIMWQILDGVSYLHQNWILHRDLKPANIMVTVDGCVKVGDLGLARKFYNMLQTLYTGDKVVVTIWYRAPELLLGARHYTPAIDLWAVGCIFAELIGLQPIFKGEEAKMDSKKSVPFQSNQLQRILEVLGSPNQKNWPNIHKYPEYEQLGKFPKYRDNLATWYHSAGGRDKNALDLLYKLLIYDPTQRIDAINALDHEYFTSGEFPVCENVFEGLNYKYPARRIHTNDNDITNLGIHRNKGISSQQPAVVNNSSTAALGGLGVNRRILAAAAAAAAAVSGNNPSGQPASRSGEPNRKKRR
Length607
PositionKinase
OrganismZygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / NBRC 1130 / NCYC 568 / NRRL Y-229) (Candida mogii)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Saccharomycetaceae> Zygosaccharomyces.
Aromaticity0.08
Grand average of hydropathy-0.563
Instability index46.73
Isoelectric point9.39
Molecular weight67960.12
Publications
PubMed=19525356

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblFungi

GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
cyclin-dependent protein serine/threonine kinase activity	GO:0004693	IEA:EnsemblFungi
RNA polymerase II CTD heptapeptide repeat kinase activity	GO:0008353	IEA:EnsemblFungi

GO - Biological Process
negative regulation of filamentous growth	GO:0060258	IEA:EnsemblFungi
negative regulation of transcription by RNA polymerase II	GO:0000122	IEA:EnsemblFungi
nuclear-transcribed mRNA catabolic process, non-stop decay	GO:0070481	IEA:EnsemblFungi
phosphorylation of RNA polymerase II C-terminal domain	GO:0070816	IEA:EnsemblFungi
positive regulation of transcription from RNA polymerase II promoter by galactose	GO:0000435	IEA:EnsemblFungi
protein destabilization	GO:0031648	IEA:EnsemblFungi
response to oxidative stress	GO:0006979	IEA:EnsemblFungi









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25861
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     300.80|      98|     124|      23|     141|       1
---------------------------------------------------------------------------
   23-  141 (150.43/144.75)	GGQQRVQ.....PQQQPQQGFSGRSLWQNQgshqfnqqqSSVLGMK.STSGrnvhgkqpMLMANNDVFSIGPYKARKDST.RVSVLDKYEIIGYIAAgtygKVYKARRRAISKDDDTSI.DPVNTEM
  147-  252 (150.36/99.61)	GGLQTRQsmlaeSNSHPDAEIVNRSVRTSE.........SEINGLRtSDSG........ILSANNTHSPIGTHGSNGTLTpKGAIFRKKASPVYYAI....KKFKTERDGVEQTHYTGIsQSACREM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     134.95|      42|     116|     282|     325|       2
---------------------------------------------------------------------------
  282-  325 (70.95/58.32)	FAEHDLLQIIhFHSHpEKRMIPQKMI...GSIMWQILDGVSYLHQ.NW
  399-  444 (64.01/42.28)	FAELIGLQPI.FKGE.EAKMDSKKSVpfqSNQLQRILEVLGSPNQkNW
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25861 with CDK8 domain of Kingdom Fungi
Unable to open file!