<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25860

Description Mediator of RNA polymerase II transcription subunit 14
SequenceMTTESDSVEMYGENGSNTTTAGAATAAVNGSIDTDDSKKGQMTNGMTKDSKIGAATTGTKNLASQPPPAIPHVEINQVSFSLVMRNLTVFTIKEVSQFMKTNVHVNPTEPSTTKKLQFLHMIIFLRNQYLKIYVLVKWCRTIKNNNFHMMIDLLNWFRITNAVVNNCIWAIKASLVGMANAKLPNVDLVTALEVLSLGRPNLPTHQFKLSGEGDDLYQLSGGMIKVPPKVVLQKLKDMNLSISIKIALMDVPDAFRNYSFKNGRIYIFVPDEYEIQLATTDYRASLFFVDMNFSFCKQTLPLDKLKLEKVINEILFKSVKPLVALHKFLRKYVLTLKLYMIYLELVALEESGKFSGGHLVHRYDSKRSIISIRYWLHSKMGKKSKITIGVDRRTENLILKWDNELALQSKRMPVVYTNILDNLESILDEIMFNHSHIIRANLLSKGVFFEDEENLDVLLFQIPTTCISMAPVQLKIDLISGVFYFKNPTPLLLSYVSQINRAENADELISVLQRLKRDKISQVLRNMFEKTGWVCSKVIKLDHPIATQVNTAESSNNNGPLSSPTSLLQDDLFIRLPNWPANWYLILTVVSSNASCVVEKRIGKIVSIKGHWKLSYLGNSNVTSAKLESMTYQKVLYLQKTILHRIVNHMIIDSLNQLKISNKISTGDMLSSLPDYVVHGAHQDKANDDNDTNHENDYTSIIILELESFLEGSKALNNILESSMFMHIDYYNSEISLFGKFKRDTTMIKCKCDELLIHFVPGESLAFYLSEKFTNLNMIVDYLIKFRQKLMQLVILTDVVERLHKNFASDDFKIVALKPNEISFKYLKNNTDSQDCTISIVSNEQMVENLTVQLSPSNPQHIIQPFIDNGHMDYHFIFNYLQFTSSLFTVLENIIKQQTNSGSYTMVSLGLHNVCEYQLVYHNPEAGTKITLIIELKNVSHNGAKKVQFYIHFSDEEHISTKSMAYPLVHQVRNQVFMLDPKDSPTNSNKNKKYQGAVRLVDGISCDPTNIEPILLEIHEILRMDSNVQVNNPSPSSNGIQQQTSSAAKIPTAS
Length1054
PositionTail
OrganismZygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / NBRC 1130 / NCYC 568 / NRRL Y-229) (Candida mogii)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Saccharomycetaceae> Zygosaccharomyces.
Aromaticity0.08
Grand average of hydropathy-0.142
Instability index31.53
Isoelectric point8.31
Molecular weight119617.73
Publications
PubMed=19525356

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
ECO:0000256	RuleBase:RU365082
GO - Cellular Component
core mediator complex	GO:0070847	IEA:EnsemblFungi
mediator complex	GO:0016592	IEA:UniProtKB-UniRule
GO - Biological Function
RNA polymerase II repressing transcription factor binding	GO:0001103	IEA:EnsemblFungi
TFIIB-class transcription factor binding	GO:0001093	IEA:EnsemblFungi
transcription coregulator activity	GO:0003712	IEA:UniProtKB-UniRule
GO - Biological Process
negative regulation of transcription by RNA polymerase II	GO:0000122	IEA:EnsemblFungi
positive regulation of transcription by RNA polymerase II	GO:0045944	IEA:EnsemblFungi

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP25860
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     249.37|      83|     290|     168|     263|       5
---------------------------------------------------------------------------
  168-  263 (126.94/116.41)	IWAIKASLVGMANAKLpNVDLVTALEVLSLGRPNLPTH..QFKLSGEGDDLYQlsggmikvppkvVLQKLKDMNLS............ISIKIALMDVPDAFR....NYSFKNG
  459-  559 (122.43/83.89)	LFQIPTTCISMAPVQL.KIDLISGVFYFKNPTPLLLSYvsQINRAENADELIS............VLQRLKRDKISqvlrnmfektgwVCSKVIKLDHPIATQvntaESSNNNG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     247.30|      85|      96|     779|     874|       6
---------------------------------------------------------------------------
  779-  874 (118.99/106.58)	IVDYLiKFRQKLmqLVILTDVVERlHKNfaSDDFKIVALKPNEI.SFKYLKNNTDSQDCTISIVSNEQMVEN..LTVQ..LSPSNPQHiiqpfIDNGHMDY
  877-  966 (128.31/81.41)	IFNYL.QFTSSL..FTVLENIIKQ.QTN..SGSYTMVSLGLHNVcEYQLVYHNPEAGTKITLIIELKNVSHNgaKKVQfyIHFSDEEH.....ISTKSMAY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.03|      15|     527|     148|     163|       7
---------------------------------------------------------------------------
  148-  162 (30.24/16.37)	HMMIDLLNWFRITNA
  649-  663 (28.79/15.01)	HMIIDSLNQLKISNK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25860 with Med14 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MTTESDSVEMYGENGSNTTTAGAATAAVNGSIDTDDSKKGQMTNGMTKDSKIGAATTGTKNLASQPPP
1
68










Molecular Recognition Features






MoRF SequenceStartStop




NANANA