Description | Mediator of RNA polymerase II transcription subunit 13 |
Sequence | MTTDSLTYRLDDLLSSFYRIERLEKVNFHQYVPKKQEDQWSIQMELLLRKQDPRNLVALLSRELWCFSINDQEVPTPPKLGGDESNSEELIPDKKGHFTADYSKPNLPPHYALFLKALRRMIYINITAKSFNKLIPYGNACFSLDGVKACQVLHIEPHLFDNGELVTTITTKSPGLAPLSIDRIEDSFLKNHALYLAPSGIRMYLPSSNKQKCLTRPPKNAEVLLMTLYVSHGIRLIEKRDLQWVKLIPHLGHLNGLTPNIASYMDPPTDARTIIWPLDLCFAQVVSDNQFDSKESPCYHDLNDAFDVIDDFVQLKQTSAYRTPKSSSGTTGAVLSGNALSSGGAYTDQFQPYYRSQIGSAPSTSYLLSKENSDLKPISRDTSPAYSSFEKPLTGSGEHFGPSAFSTTPSLNESEIFNDKKSLMNEGDVSPLKSDVGTSLKQMLRETEPPMAPMAMVSPSRDVSPSQKHEAVTDSPRDEELFGDEDDEDLFGESNNLSSGENKSHGGTPARKGKSDEITDDMFGMSDDEEQDHNEKDKESPYFFRDGRPPPLEQPLKKANLKRKYLDIPIEEMTLTHTPLYTDPGAPLPIETPREKRKSVFAPLNFNPIIESNVDNKYKNGGKFSIGPSHNDEALIFDISTADSSSSEDDSDSSDEFEGLNIRPDIRSTELTTQDPQYGSYLQGVQDSVPQELLRNELMSTSVPPGSEMLKEGSNTIWRMSNPDISQPESLLTTLNDNLATDGTLTKMSTTPDQLTGISKITRGGQLPPFSENEVSLPETTDTSLMPESSSSLPFLLRHMPLSSIPDVFYSSNISATITRKNQDILGLLAEQIVFDSDMFDGVGGPDIAYSALKECNDLGLISNTMRDLFSDFSRIRGDNIISKIYPIKVPSIHVRRHHEVIKMNADSQLFSQYLNVRPAKGIKNFRFLMLTASFFEDCSSFVSTLSQTYINYEFGFCELLKLTGEDTQGLNFLQNFEESKLLLLAAQIVSYCSTNKNAGKDVPLMIILPIETNSLEEIVTKTSKFETIRNEVLSKIPNAQLFLKLISMEFVRNPLISVDSYGNLCLSIYNILPPKALKFTSIACTLPKEITFRTMQQTNASSAIHYDAFIHLAYARSVDKEWVFAALSDSTGNENMIKTLYVGRSRSKFDEACNEIWASALRLASTKCGKLCLILTRLNGVLPDDELMNWRRLSGRSIHLAVVCVDDNTKISFLDQDDSYPTFKPLLQNGERTKKLDTSTFDDYEVRNIYDDVHGVIFRNSFPLTNSQHRCAIKSGALIRYKDCDGDKILDKFEVNLLNCPHSDSTKLLETILEEFRSLSALNSWFGISSGKITHVPWHVLSVKKMMKVLVHTRVKVLE |
Length | 1360 |
Position | Kinase |
Organism | Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / NBRC 1130 / NCYC 568 / NRRL Y-229) (Candida mogii) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Saccharomycetaceae> Zygosaccharomyces. |
Aromaticity | 0.08 |
Grand average of hydropathy | -0.404 |
Instability index | 47.72 |
Isoelectric point | 5.29 |
Molecular weight | 152514.78 |
Publications | PubMed=19525356 |
Annotated function |
Component of the SRB8-11 complex. The SRB8-11 complex is a
regulatory module of the Mediator complex which is itself involved in
regulation of basal and activated RNA polymerase II-dependent
transcription. The SRB8-11 complex may be involved in the
transcriptional repression of a subset of genes regulated by Mediator.
It may inhibit the association of the Mediator complex with RNA
polymerase II to form the holoenzyme complex.
ECO:0000256 RuleBase:RU364134 |
GO - Cellular Component | mediator complex GO:0016592 IEA:EnsemblFungi |
GO - Biological Function | transcription coactivator activity GO:0003713 IEA:EnsemblFungi |
GO - Biological Process | negative regulation of transcription by RNA polymerase II GO:0000122 IEA:EnsemblFungi positive regulation of transcription from RNA polymerase II promoter by galactose GO:0000435 IEA:EnsemblFungi |
Binary Interactions |
Repeats | >MDP25857 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 107.05| 31| 32| 484| 514| 1 --------------------------------------------------------------------------- 484- 514 (54.69/32.54) DEDDEDLFGESNNLSSGENKSHGGTPA..RKGK 516- 548 (52.36/30.83) DEITDDMFGMSDDEEQDHNEKDKESPYffRDGR --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 89.15| 30| 32| 807| 838| 2 --------------------------------------------------------------------------- 807- 838 (41.06/32.18) DVFYSSNISATITRKNQDiLGLLAEQI..VFdSD 841- 872 (48.09/28.22) DGVGGPDIAYSALKECND.LGLISNTMrdLF.SD --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 54.00| 16| 32| 321| 336| 3 --------------------------------------------------------------------------- 321- 336 (27.72/13.06) YRTPKSSSGTTGAVLS 354- 369 (26.28/12.02) YRSQIGSAPSTSYLLS --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 118.82| 29| 32| 402| 431| 4 --------------------------------------------------------------------------- 377- 398 (32.40/13.51) PISRDTSPAYSSFE.....KPLTGSGE.. 402- 430 (47.67/25.52) PSAFSTTPSLNESEIFNDKKSLMNEGDVS 442- 464 (38.74/18.00) QMLRETEPPMAPMAMVSPSR......DVS --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 73.88| 22| 32| 1247| 1270| 5 --------------------------------------------------------------------------- 1247- 1270 (36.32/26.93) VRniYDDVHGVIFRNSFP..LTNSQH 1280- 1303 (37.57/21.49) IR..YKDCDGDKILDKFEvnLLNCPH --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 99.21| 32| 33| 1177| 1208| 8 --------------------------------------------------------------------------- 1177- 1208 (55.76/32.23) TRLNGVLPDDELMNWRRL..SG.RSIHLAVVCVDD 1210- 1244 (43.45/23.53) TKISFLDQDDSYPTFKPLlqNGeRTKKLDTSTFDD --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 50.81| 15| 34| 581| 601| 12 --------------------------------------------------------------------------- 549- 565 (23.46/12.97) PPPLEQPLKKAnlKRKY 587- 601 (27.36/ 8.92) PLPIETPREKR..KSVF --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) ANLKRKYLDIPIEEMT 2) EALIFDIS 3) KESPYFFRDGR | 559 633 538 | 574 640 548 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab