<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25855

Description Mediator of RNA polymerase II transcription subunit 17
SequenceMSENHDESSNDLNLVENGIQLALDPNLITLPLHGSVSSPLTNAPNSNAQTSENGNPDQMDVDSEPAQGNNNAGQSLINNPYGLFGQMPLEHLIPLVLQQKGPGFKFADLSEDALEEEIEKDKSGGDEDARPDLMDVDPSENQVEEVPPEAVEEDNQETTKDGEKEEETITQEQFVRMRREMVEHINIAMNESSLALEFLSLLLSSVRESVALSSMSPFLKKIVPVASLNSDRVSSEPKTVEDQLTMQVIDRGWKIRCLNESRTLLKENHSMLEEKLKNEHRYWKKISQYISNKDVIFKLRDKSTGLRSLGVKYGYEDSGSTYRLDRGVAILKTNPETNTLELVPITGENSPSPHNEKFIRIRIFTKIEFEDDYILSGESSVDNVFLNSDSSGKKDQEDIRSQIEKLKALIFEQELMYQLRRECAQLISYGVTIENEKKVVIELPNEKFEIELVSLDDASVVNHEQDAPKINDRRANLMLITVRMLLVVMFKKNLRQRLTSSTRNSHLNVDKDILLIRPLLGKMRHQNYKLLLRKILKTHVLDVVETSTFSETVVHPPRHENADDVNLDIHIAKLNQEISTFDRLLTTCKTQFDVKLVNEDKLSLTLESPNYCNLAVRVLYQNASKNVSFDTRFSEFKEVEEILHFIVNEYIKKT
Length654
PositionHead
OrganismZygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / NBRC 1130 / NCYC 568 / NRRL Y-229) (Candida mogii)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Saccharomycetaceae> Zygosaccharomyces.
Aromaticity0.06
Grand average of hydropathy-0.542
Instability index46.02
Isoelectric point4.99
Molecular weight74554.28
Publications
PubMed=19525356

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
ECO:0000256	RuleBase:RU364140
GO - Cellular Component
core mediator complex	GO:0070847	IEA:EnsemblFungi
mediator complex	GO:0016592	IEA:InterPro
GO - Biological Function
activating transcription factor binding	GO:0033613	IEA:EnsemblFungi
RNA polymerase II complex recruiting activity	GO:0001139	IEA:EnsemblFungi
RNA polymerase II core promoter sequence-specific DNA binding	GO:0000979	IEA:EnsemblFungi
transcription coregulator activity	GO:0003712	IEA:InterPro
GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IEA:EnsemblFungi

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP25855
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     158.45|      46|     240|     152|     197|       1
---------------------------------------------------------------------------
  152-  197 (74.39/46.30)	EEDNQETTKDGEKEEETI.TQEQFVRMR...REMVEHINIAM...NESSLALE
  355-  384 (23.80/10.26)	....................NEKFIRIRiftKIEFEDDYILS...GESSVDNV
  393-  442 (60.26/36.23)	KKDQEDIRSQIEKLKALIfEQELMYQLR...RECAQLISYGVtieNEKKVVIE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.68|      25|      31|     228|     254|       2
---------------------------------------------------------------------------
  228-  254 (39.17/28.72)	LNSDR..VSSEPKTVEDQLTMQviDRGWK
  258-  284 (39.50/22.99)	LNESRtlLKENHSMLEEKLKNE..HRYWK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.93|      33|     304|       7|      44|       4
---------------------------------------------------------------------------
    7-   44 (50.64/49.20)	ESSNDLNLVENGIQ.LALDPNLITLPLhgsvsSPLT..NAP
  316-  351 (48.28/33.76)	EDSGSTYRLDRGVAiLKTNPETNTLEL.....VPITgeNSP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25855 with Med17 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FKFADLSEDALEEEIEKDKSGGDEDARPDLMDVDPSENQVEEVPPEAVEEDNQETTKDGEKEEETITQEQFV
2) LPLHGSVSSPLTNAPNSNAQTSENGNPDQMDVDSEPAQGNNNAGQSLINNPYGLF
104
30
175
84










Molecular Recognition Features






MoRF SequenceStartStop




NANANA