<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25802
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MSAGAVSWSKNGFVCYVSRGPAHNLALTYLENTNGRRWQLASSQRLCVKPSDDSAMPSVELVSWSNLSTDLAVFDENGHFYVLLAGVGLLSEENGGNSSNGAATNTAAANGGAANGEKGDGVKGAAGANGAVAANGPHSNGSAKTAAAGGAAASKPGDAAAKATDTPSYELTSYNHTEMIFRDRTPGRCVAFRWLGVDKAQMRPKAAARSAAGEYSYDVGQHGPTHPAHPIASKQACVALRQNGLFTLYYQGEHKVEYHKLSVSLGGGVHFSHASIGFCDRRIVVAAYDALTRRVSVFVLAVDWGYLVESAARQRSDPHHHTPLNMQTSPRLSCTLVQEIRVPAGAMGGDTEHGQSGQELKRNHDAGNENQIAQSEAQFLQNTTTTDNGPNMTTSASDSEIVSSEIKSIDIIGPDVLVTYHAVNSSAATSSAIHRYRLRHIDPLHSLGPELNGIFSDSKMQFPELVLFDVLRVPGKINQITPCLDDSLVLFFRSDGAVYMLREWNAPLVRIDVGAQLSPFEPPSSVASALDCGYRVPCVTGNVALSPNMAALVHLPPGADTVSFSLFQPAPNSEAIPTETTAVAIAHAHAHACYTNSCSDDVVALATAEVSRGTHNDDLIERTVVEAHKSISFHLNSYSKESVDKLLSNPALQKLLSLQLALGELHSSNSTIRDVAWIVLNLRSTSFAIMFSLSSIYRQISRKKPANDSLEDSTVRAESIVSLVGSVKWLIDLIVYLNQELLQISLSKDNPDNSSVTVHNSVTLPLIMSKVPRLFLMYAISSIAKTHEILKKIHKDLTEANKLFTPMQEALMRFFGTCGSSPLNLNVFENFLRDCDTSTSKDLAARAAAENISPLQLEHQLFCIGKIPSPLISVAITMTDHHYAIISRDSKLSELFFYNTDWIDAGVGRSNRVFTESSPNEQFMPTQVRLQYSENEVVDALRKIIIRAPSTLRSGGVSTMGQGYVSNNKIRKCTRCRAVSLIADPLVFGTPKTISLWTMVFQRTCICGSAWVNCL |
Length | 1015 |
Position | Tail |
Organism | Clavispora lusitaniae (strain ATCC 42720) (Yeast) (Candida lusitaniae) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes>
Saccharomycetales> Metschnikowiaceae> Clavispora.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.121 |
Instability index | 38.65 |
Isoelectric point | 6.57 |
Molecular weight | 109676.71 |
Publications | PubMed=19465905
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Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP25802
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 205.82| 45| 45| 152| 196| 1
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46- 88 (57.45/30.44) LCVKPSDDSA....MPSVELVSWSNlsTDLAVFDENGHFYVLLAGVG
152- 196 (78.45/44.23) AASKPGDAAAKATDTPSYELTSYNH..TEMIFRDRTPGRCVAFRWLG
200- 244 (69.92/38.63) AQMRPKAAARSAAGEYSYDVGQHGP..THPAHPIASKQACVALRQNG
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 101.92| 31| 45| 496| 527| 2
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496- 527 (53.54/37.12) GAVyMLREWNAPLVRIDVGA...QLSPFEP.PSSVA
541- 575 (48.38/28.20) GNV.ALSPNMAALVHLPPGAdtvSFSLFQPaPNSEA
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 82.66| 17| 18| 94| 111| 3
---------------------------------------------------------------------------
94- 111 (28.84/20.98) NGGNSSNGAAtNTAAANG
117- 130 (24.56/12.42) EKGDGVKGA....AGANG
135- 149 (29.26/16.30) NGPH.SNGSA.KTAAA.G
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 124.91| 43| 45| 705| 749| 4
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705- 749 (60.87/47.90) PANDSLE.DSTVRAESIVSLVGSVkWLIDLI..VYLNQELLQiSLSKD
751- 796 (64.03/41.22) PDNSSVTvHNSVTLPLIMSKVPRL.FLMYAIssIAKTHEILK.KIHKD
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 89.57| 18| 51| 806| 823| 5
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806- 823 (34.25/24.14) PMQ.EALMRFFGTCGSSPL
826- 843 (28.87/19.06) NVF.ENFLRDCDTSTSKDL
854- 871 (26.46/16.77) PLQlEHQLFCIGKI.PSPL
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