<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25796

Description ACYPI000803 protein
SequenceMATPTSGNGNLVDEFDEAFMSLIEIISKEEETFSPVDKEEVRVDIDQCTMRFIDIARQLEAFFLQKRFLLSALKPELIVKEDISELRLELARKDDLIRRHYDKISIWQNLLADLQQVAKSPAQSTMGQSPMPAPMPSPLPIGPPQQQLSPQVPGGMVSPQQAMFLQQQQQQQQQQQRPGPVAGGPMPGALLQGPLAYLEKTTSNIGMGDGRR
Length212
PositionHead
OrganismAcyrthosiphon pisum (Pea aphid)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Paraneoptera> Hemiptera> Sternorrhyncha> Aphidomorpha> Aphidoidea> Aphididae> Macrosiphini> Acyrthosiphon.
Aromaticity0.05
Grand average of hydropathy-0.434
Instability index85.69
Isoelectric point4.91
Molecular weight23623.83
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25796
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.49|      22|      24|     145|     166|       1
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  145-  166 (41.61/17.48)	QQQLSPQVPGGMV.SPQQAMFLQ
  170-  192 (37.89/15.40)	QQQQQQQRPGPVAgGPMPGALLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.92|      16|      33|      14|      46|       2
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   18-   33 (26.05/49.80)	AFMSLIEIISKEEETF
   48-   63 (28.87/ 6.84)	CTMRFIDIARQLEAFF
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25796 with Med28 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AKSPAQSTMGQSPMPAPMPSPLPIGPPQQQLSPQVPGGMVSPQQAMFLQQQQQQQQQQQRPGPVAGGPMPGALLQGPLAYLEKTTSNIGMGDGRR
118
212










Molecular Recognition Features






MoRF SequenceStartStop




1) LLQGPLAYLE
190
199