<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25775

Description Uncharacterized protein
SequenceMNGLPQQPWHSELNPKERQGFINIIVQSVFQIQGNNSFNNAKTKQLAEDFEKWAFSNARSKKEYVDMLRNKVSSIKQAAVNGRSSMAANAPDPAATLNGMQSMGQQNIPVQPQMQQHQQQNQYMKNNQQQQPQQQQQQQQPQRPMMNNFSNDQRVNLKTAPIPEALLKRIPGLPVGVNTWAQITQMLQNGQINPQLMNTIKQVYTVHSQLLQARSHQDAMQKPPQQPQVQTQPQTQPQPQRDQMFMQQNRMANNQQHIQQQAQNPQFNSKLVQGQQQQQPQQPPQQSATQQPQLQITQEMLREGTTQALNLIERLKQTGDLPQTLAPAQQQSFIKTFIQRHYLPRVLQNKNATANPSSQQANNQNSVPQAVPGFPGQSVPLQQAQKFVNTSPLMNQTLPTTFNNARPMQKPQQQKQPQQSVPSNSMFGALPNAQQPVPNMHQQQQKQPIKLLPGIQATEEDWTNLRKVYAEALQLPIKLKNVTNEITPDQKRAVLDQAKTMIQLSITTENLIPNFFIATKNVEGTRRLIQIKFMLKEVLESLKRNEYLATPNILQRVQTQIHKYITYLKELQQRKFQQLQNVQSLQQQQQQQQQTSNLQQVPQMGQGNKQLPNNMLYTSQTNPDSLMGGSNANNMFSGLGIQDPSLNNTAAFSQQQRVTPASGQQLNSSPLMQTPMLNQNSLMPNQIQQFPPQQQQHRQQQRALPQQRLAQQVQTSPNAKPQQYMQQLPNNMPQPQHSQQPYQASLEQQVPQQMLQQPQQRQQLQQQVPIQQVQQAKRKVKSSVSGPSTGAPGKQAKVQGNRMAATNAAAKSSPVVMATPSSVQSPENLVATKEQNEIQAKEEAESAAINTSRMRIKELGLDDPASYFLCMLSRSLDLKDEETQLLDSKESNSVKKDTISQKGITPSAILQTPLSFIKTPGSSRPLDSPSTSKNANEWSSKVTPAAINAVFRDVSAISKTLSFGMLPTPPEENEVLKRSSDADEEPSKKAKLENKLQNSLWDFDYAEELFATDHLSP
Length1017
PositionTail
OrganismKomagataella phaffii (strain GS115 / ATCC 20864) (Yeast) (Pichia pastoris)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Phaffomycetaceae> Komagataella.
Aromaticity0.05
Grand average of hydropathy-0.913
Instability index67.74
Isoelectric point9.80
Molecular weight114703.95
Publications
PubMed=19465926

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25775
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     925.19|     147|     147|     128|     274|       1
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    6-  129 (115.43/24.65)	..QQPW.HS...ELN...PKE..................R....Q..GFINI...IvqsvfqiqGNNSFNNA.....KTKQLAEDFEK.............WAfsnarskkE...YVD............MLR....N...............KVSSIKQA.AVNGRSSMAA..........NAPDpaatlnGMQSMG..QQ....N..IPVQP.Q...M..QQHQQQNQ.YMK.......NN..Q.Q...........................
  130-  274 (267.54/67.22)	..QQPQ.QQ...QQQ...QQP..................Q....R..PMMNN...F........SNDQRVNL.....KTAPIPEALLKRIPGLPVG.V.NTWA........Q...ITQ............MLQ....NG.........QINPQLMNTIKQVYTVHSQLLQAR..........SHQD......AMQKPP..QQ...PQ..VQTQP.Q...T..QPQPQRDQMFMQ.QNRMA.NN..Q.QHIQQ..QA....QNPQFNS...KLVQG
  276-  433 (151.58/34.77)	QQQQPQ.QP...PQQsatQQP..................QlqitQ..EMLRE............GTTQALNLierlkQTGDLPQTL...APAQQQSfI.KTFI........QrhyLPR............VLQ....NKnatanpssqQANNQ..NSV.......PQAVPGF..........PGQS......V...PL..QQ...AQkfVNTSPlM...N..QTLPTT...FNN.ARPMQ.KP..Q.QQKQP..QQ....SVPS.NSmfgALPNA
  434-  607 (155.52/35.87)	QQPVPNmHQ...QQQ...KQP..................I....KllPGIQA...T........EED.WTNL.....RKV.YAEAL.....QLPIK.LkNVTN........E...ITPdqkravldqaktMIQlsitTE.........NLIPNFFIATKNVEGTR.RLIQIKfmlkevleslKRNE......YLATPN..IL...QR..VQTQI.HkyiT..YLKELQQRKFQQlQNVQSlQQ..Q.QQQQQ..QT....SNLQQVP...QMGQG
  608-  758 (148.21/33.82)	NKQLPN.NM.lyTSQ...TNPdslmggsnannmfsglgiQ....D..PSLNNtaaF........SQQQRV.........TPASGQQLNSSPLM..................Q....TP............MLN....QN.........SLMP...NQIQQ.FPPQQQ..QHR..........QQQR......AL...P..QQrlaQQ..VQTSP.N...A..KPQ....Q.YMQ.Q..LP.NNmpQpQHSQQpyQAsleqQVPQ..Q...MLQQP
  760-  854 (86.92/16.68)	QRQQLQ.QQvpiQQV...QQA..................K....R..KVKSS...V........S..............GPSTGA.....PGKQAK.V.............Q..........................G.........N....RMAATNA.........AAK..........SSPV......VMATPSsvQS...PEnlVATKE.Q...NeiQAKEEAESAAIN.TSRM....................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     116.40|      36|      46|     899|     941|       2
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  905-  941 (60.30/38.90)	TP..........SAILQTpLSFIKTPGSSRPLDSPSTSKNANEWSSK
  943-  988 (56.10/22.48)	TPaainavfrdvSAISKT.LSFGMLPTPPEENEVLKRSSDADEEPSK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25775 with Med15 domain of Kingdom Fungi
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