<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25767

Description Mediator of RNA polymerase II transcription subunit 19
SequenceMSAQPGQQSAITAVNAFPTPASSVGGIAKDSQEPSEKGIRLSTEIEGAPGFTDADSGVSHTQHDQQRQQEETAGSNAEDEAMDIDRNEGISEHPKIAALQNDLGQAFHTCKTSYSISGPNPHFDLVSLYGLGPVAASVARTDPVTGEKINRLRKSYEGKIKGLGLSGRNKPVKHDPGAPGGLRQLTMWPEEEWQNQKVIGKDIKVAEPDSTLHKLYMRAMKMEPGPVPNNDYWEDVLGHEKPAKQSATVPQTKKAGDASAAGIIRQPGQANGTPMSTSISPVESGRPKRTGKKRSYNDSSFVGYGEGFPDDDMELDGSFYSNSEESGRGSAKKKRKKVTTLAFSPWVLLARLHLFDLKLMQMLS
Length364
PositionHead
OrganismUncinocarpus reesii (strain UAMH 1704)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes> Eurotiomycetidae> Onygenales> Onygenaceae> Uncinocarpus.
Aromaticity0.06
Grand average of hydropathy-0.734
Instability index45.93
Isoelectric point6.53
Molecular weight39343.48
Publications
PubMed=19717792

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
ECO:0000256	RuleBase:RU364151
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro
GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro

Interaction

Binary Interactions











Repeat regions





Repeats
>MDP25767
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     179.72|      59|     108|     118|     179|       1
---------------------------------------------------------------------------
  118-  179 (94.12/54.31)	GPNPHFDLVSLY......GLGPV..................AASVARTDPVTGEKINRLRKSyEGKIKGLGLSGRNKPVkhDPGAP
  205-  287 (85.60/40.98)	VAEPDSTLHKLYmramkmEPGPVpnndywedvlghekpakqSATVPQTKKAGDASAAGIIRQ.PGQANGTPMSTSISPV..ESGRP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.30|      32|      37|      17|      53|       2
---------------------------------------------------------------------------
   22-   53 (53.40/47.25)	SSVGGIAKDSQEPSEK..GIRLSTE...IEGAPGFTD
   56-   92 (44.90/25.32)	SGVSHTQHDQQRQQEEtaGSNAEDEamdIDRNEGISE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25767 with Med19 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IKGLGLSGRNKPVKHDPGAPGGLRQLTMWPEE
2) MSAQPGQQSAITAVNAFPTPASSVGGIAKDSQEPSEKGIRLSTEIEGAPGFTDADSGVSHTQHDQQRQQEETAGSNAEDEAMDIDRNEGISEHPKIAALQND
3) VPNNDYWEDVLGHEKPAKQSATVPQTKKAGDASAAGIIRQPGQANGTPMSTSISPVESGRPKRTGKKRSY
160
1
227
191
102
296










Molecular Recognition Features






MoRF SequenceStartStop




1) AITAVNAFPTPAS
2) EKGIRLSTEIEGAPG
3) FPDDDMELDGSFY
10
36
308
22
50
320