<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25765

Description Mediator of RNA polymerase II transcription subunit 16
SequenceMLIDLPYETGGAILIVTYSMQGKLCVYRVQVKWETAPVDPGQQKQPGFSPPHAPVIQIIHVKTETPKTVFTKPIDHNVNFTSMIKPISNLTHLEIINVSSDSSSGGSNEPYILAVFSAPIPTLETQQQPNSASSILVRWDLRSASQSLHDSFDEVPPRRPTHHLKHRTELVRQNDMYLDQRVLSIDHFEAGNVIALTFDNGNIKFFDAKTVLPSESTDNLTVISNLPQAGFSFPTIGSATCISFSPCGCLAVTLDENSALQLHAMELSLATEDGLYRDGARNGFVTEIYQALSMNTDFTIEQDKLMNNPYIQKCLSMQAALGFNGQFQPRSLTAALSWFILQLRQISILFAYFLHFNKSGSDSECHEPGMVPEHHELFEK
Length380
PositionTail
OrganismUncinocarpus reesii (strain UAMH 1704)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes> Eurotiomycetidae> Onygenales> Onygenaceae> Uncinocarpus.
Aromaticity0.09
Grand average of hydropathy-0.167
Instability index47.74
Isoelectric point5.48
Molecular weight42299.50
Publications
PubMed=19717792

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25765
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     108.43|      29|     197|     108|     136|       1
---------------------------------------------------------------------------
   69-   93 (24.52/10.24)	.......VFTKPIDhnvNFTSMIKPISNLTHL
  108-  136 (50.18/27.10)	NEPYILAVFSAPIP...TLETQQQPNSASSIL
  307-  331 (33.73/16.29)	NNPYIQKCLSMQAA..lGFNGQFQPRS.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     103.37|      31|     103|      31|      64|       2
---------------------------------------------------------------------------
   31-   64 (49.61/34.29)	VKWETApvDPGQQKQPGFS..PPHAPVIQIIHvKTE
  137-  169 (53.75/27.61)	VRWDLR..SASQSLHDSFDevPPRRPTHHLKH.RTE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25765 with Med16 domain of Kingdom Fungi
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