<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25751

Description MED26 transcription factor
SequenceMAPPSRDYWLGFFRGAGDNVFDAIDAAITVAASDHPAALRERRDGIAERLFTALLVTGAAGAGAAAGQGGSAGRTPVPSLCSSDRAEAVTDDGAPRGDDPVLAETERIKAVLLGGHDKSESELLELLRRLQELDLAFDTLDVTAIGKAVSNFRKHSSKQIRTLVRSLIEGWKRTVDMWIARRREAVVDQTPQSMGPSSLEDQEDRGAAFTHMDEGDLFATPSTTIRLSEENPGSKFSDATEGDGGMVNNTSRDCGERYPSNQGGPARRPPPMGQQRYDPGPCWRQEPSSGQTKEQFVAEMLARPSSAAGSGPGRPQQARPRQQRQEDASSPAQGSRPQSVGCF
Length343
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.05
Grand average of hydropathy-0.656
Instability index56.47
Isoelectric point5.34
Molecular weight36789.26
Publications
PubMed=19936069

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25751
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.89|      19|      21|      69|      89|       1
---------------------------------------------------------------------------
   69-   89 (29.33/18.34)	GGSAGRTPVpsLCSSDRAEAV
   93-  111 (33.56/15.27)	GAPRGDDPV..LAETERIKAV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.13|      18|      25|     202|     223|       2
---------------------------------------------------------------------------
  196-  216 (29.41/22.89)	PSS..ledQEDRGAAFTHMDEGD
  221-  243 (27.72/11.03)	PSTtirlsEENPGSKFSDATEGD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.21|      14|      19|     303|     316|       4
---------------------------------------------------------------------------
  303-  316 (27.92/11.49)	RPSSAAGSGPG.RPQ
  324-  338 (20.29/ 6.54)	RQEDASSPAQGsRPQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25751 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AAGQGGSAGRTPVPSLCSSDRAEAVTDDGAPRGDDPV
2) RREAVVDQTPQSMGPSSLEDQEDRGAAFTHMDEGDLFATPSTTIRLSEENPGSKFSDATEGDGGMVNNTSRDCGERYPSNQGGPARRPPPMGQQRYDPGPCWRQEPSSGQTKEQFVAEMLARPSSAAGSGPGRPQQARPRQQRQEDASSPAQGSRPQSVGCF
65
182
101
343










Molecular Recognition Features






MoRF SequenceStartStop




1) SRDYWLGFFR
2) TKEQFVAEMLARPSSAAGSGPGRPQQARPRQQRQEDAS
5
292
14
329