<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25744

Description Uncharacterized protein
SequenceMAGATVCYEYRPLKRPRLGPPDVYPQDPKQREDELTATSVKQGYNNQPNFSDEHGTARNCNIDTSKFGEAFAAILAEKQKLNTLQEPGRKKPPINAKDNFWPVTARSRSAINVWFQDLAGQKPLMALSKKVPIFNKKEEIFSFLCEYSVPLLRATWFVKMTSAYYVAISEAKIKKRQMNDPSQEWTQAMTRFLKEQLSKISEHYQQTPPPAGGSQSCSNLLGTNGPTMSQDTEQAMKLWQYNTRLTFYLFQEGLLDRQELLTWLLDLLDRTKSSDDSMLRLFLPMLLQYVDDFVQSQQLSRRLAYTCAKKIAIMCSDSPCASAALNNQSSVGQGSANPVSAVYSEVQHCCHHRAVVLGLSCILQTVTLCCPTALVWNGVGESKSSAVTGSPLDILPCAPSSLPLPAGLSSAANQIRSNIRAREDEIRQRGQAAEVKWSSDKCQQSRTGSTISAMLNVLEILDKHTFDRMDSNNSLDTLYNRIFGSSHGKNGAECSSNNDAIIDLLCEWGVTTKRAGEHRAMVVAYLLEKQQVEMETERLGEMETMDEKESISSASLSNNGLPPFQQLLMRFLDTKAPTLDNGEELSDEDRQAFANLVLLFSELIRSEVFSHDAYMCTLISRGDLLHTPTDSEMVAPSPMPDSKGEQAHKNKSLRHIQFARNFPLPHDNSAHEHNQRLVLLYGVGKARDEAKHQVCCLLSAILSIIFSYKEKL
Length712
PositionKinase
OrganismBranchiostoma floridae (Florida lancelet) (Amphioxus)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Cephalochordata> Leptocardii> Amphioxiformes> Branchiostomidae> Branchiostoma.
Aromaticity0.07
Grand average of hydropathy-0.417
Instability index46.78
Isoelectric point6.49
Molecular weight79632.61
Publications
PubMed=18563158

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25744
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.19|      11|      46|     179|     189|       1
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  179-  189 (23.78/13.64)	NDP..SQEWTQAM
  224-  236 (17.40/ 8.17)	NGPtmSQDTEQAM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.65|      19|      19|     340|     358|       2
---------------------------------------------------------------------------
  340-  358 (35.70/19.38)	SAVYSEVQHCCHHRAVVLG
  360-  378 (36.94/20.25)	SCILQTVTLCCPTALVWNG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.27|      28|      47|      29|      58|       3
---------------------------------------------------------------------------
   29-   58 (43.85/37.51)	KQREDELTATSVKQ.GYNNQPNFSDEhgTAR
   78-  106 (46.42/31.65)	KQKLNTLQEPGRKKpPINAKDNFWPV..TAR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     169.69|      54|     351|     115|     177|       4
---------------------------------------------------------------------------
  115-  177 (83.60/81.94)	FQDLAGQKPLMALSKKvpIF............NKKEEIFSFLCEYSVPLLRATWFVKMTSAYYvaiseakIKKRQ
  466-  531 (86.09/62.25)	FDRMDSNNSLDTLYNR..IFgsshgkngaecsSNNDAIIDLLCEWGVTTKRAGEHRAMVVAYL.......LEKQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     184.67|      57|     351|     249|     336|       5
---------------------------------------------------------------------------
  249-  307 (90.68/123.23)	LFQEGLLDRQELLTWLLD....LLDRTKSSDDSMLRLFLPMLLQYvDDFVQSQQLSRRlAYTC
  556-  616 (93.98/57.54)	LSNNGLPPFQQLLMRFLDtkapTLDNGEELSDEDRQAFANLVLLF.SELIRSEVFSHD.AYMC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.55|      20|      74|     319|     339|       6
---------------------------------------------------------------------------
  319-  339 (30.82/19.88)	PCASAALNNQSSVGqGSANPV
  396-  415 (34.74/18.38)	PCAPSSLPLPAGLS.SAANQI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.97|      14|      24|     638|     651|       7
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  638-  651 (25.10/13.55)	PMPDSKGEQAHKNK
  663-  676 (24.86/13.36)	PLPHDNSAHEHNQR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25744 with Med12 domain of Kingdom Metazoa
Unable to open file!