<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25728
Description |
Mediator of RNA polymerase II transcription subunit 15 |
Sequence | MADNNADWRSPAFRQKVMAQIDDAVRAAGNPTSKSSMEMENHVFQKAKSRVSRIPVCVEVCMGLCVCGETKKDQQRQGGGPQQDPMNALQNLTSLSQGQPSQQAMQMSQPSQLALQSQLAQSTQQAMQQQMSQQQQFQQQPPPQQFQQSQQPFQHSQQAFQQSQQPFQTSQQPLPPQPPQPGGQARMGPTMQQQQQQAQFQAQQRQQFQGQTRAQLVQQQIQQRLQQQQQLQQQQQQQQQQQQQQQQQQQQQQNLMQQQLQQQQLQQQQQQQQLQQQQLQQLQQKQLQQQKQQQLQQQQQQQQQQQQQQQQQQQSQQQQMMKQRPALQRQQNIGGLLSPSQQLQGQSPGSVQVASPAQSSAMQRPVASPAQTSSMQRQVASPAQTTTMHRQVASPAQTGSIQRQVASPAQPGSMQRQVASPAQPGSVQRQHTPQSGSQSAASPATMLPSPSPQPSMAPSPASATARTPAGVQSPVSLNTPGNPGSVGMAASPRNPTEEQAYLEKWKQLSKYIDPLQRMIKRVSNTDEHKKDLSKMKNLLEILTDQKKRLQYQTLLKCEQVLEKLELQMKMSHTTSTTTTTTTTTPAQLPKSQQHMCQPLLDAVASQLGSPMLNHTLKRTFGPALTALHGPPICFPGPPPKRQRIIPRQEYSIPNILQGEVAKLDQKFKVSLDPTQNNISTSVHLVCRLVCLPSSWSCLSSTQKKAHNAQQSHMIMTVKKSLDLRLLKLPDQHSLTQLLGAWEMSVRQACKEAVAITT |
Length | 757 |
Position | Tail |
Organism | Branchiostoma floridae (Florida lancelet) (Amphioxus) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Chordata> Cephalochordata> Leptocardii> Amphioxiformes>
Branchiostomidae> Branchiostoma.
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Aromaticity | 0.03 |
Grand average of hydropathy | -0.982 |
Instability index | 91.85 |
Isoelectric point | 10.11 |
Molecular weight | 84778.62 |
Publications | PubMed=18563158
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364148
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GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
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GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
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GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
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Interaction
Repeat regions
Repeats |
>MDP25728
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
6| 521.26| 63| 63| 191| 253| 1
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69- 125 (59.46/ 6.42) ..............ETK.KDQQRQGGGP....QQDPMNALQ...NLTSLSQGQPSQQAMQMSQPSQlalqsqlaQSTQQ
127- 181 (90.21/16.18) MQQQmSQQQ...QFQQQpPPQQFQ.........QS.QQPFQ...HSQQAFQQSQQPFQTSQQPLPP........QPPQP
191- 253 (124.44/27.05) MQQQ.QQQA...QFQAQ.QRQQFQGQTRAQLVQQQIQQRLQ...QQQQLQQQQQQQQQQQQQQQQQ........QQQQQ
256- 309 (102.96/20.23) MQQQ.LQQQ...QLQQQ.QQQQ.......QLQQQQLQQ..L...QQKQLQQQKQQQLQQQQQQQQQ........QQQQQ
312- 365 (73.05/10.74) QQQS.QQQQmmkQRPAL.QRQQNIGG............LLS...PSQQLQGQSPGSVQVASPAQSS........AMQRP
375- 438 (71.13/10.13) MQRQvASPA...QTTTM.HR.QVASPAQTGSIQRQVASPAQpgsMQRQVASPAQPGSVQRQHTPQS........GSQ..
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 89.04| 21| 21| 525| 545| 2
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503- 521 (26.07/12.60) ..EKWKQLSKYIDPLQRMIKR
525- 545 (32.42/17.21) TDEHKKDLSKMKNLLEILTDQ
547- 567 (30.55/15.86) KRLQYQTLLKCEQVLEKLELQ
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 99.40| 30| 137| 443| 499| 3
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443- 475 (52.26/16.43) PA.TMLPSPspqPSMAPSPASATAR........TPAGVQSPV
622- 660 (47.14/25.62) PAlTALHGP...PICFPGPPPKRQRiiprqeysIPNILQGEV
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 46.25| 14| 137| 587| 602| 4
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587- 602 (23.00/15.66) QLPksQQHMCQPLLDA
727- 740 (23.25/ 9.70) KLP..DQHSLTQLLGA
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