<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25723

Description Uncharacterized protein
SequenceMNRAGDPGTRQGPARSISMNGRASIKSFLLRAWRERWTELQWSVNLKQAFPGGSMDQYQLAECILQQAFVGPTPNTLVLSYLRHALSSQVVSYGAFLNALTKLKESTEYADILRVTGEVLGKLLGNGQTRALLYVGKMEEAAGWGKVEQLQATLQDSVQNLAQSGLIVRDTANSLQQAFYQLQQLPHGKALSPPGQSHGHGALNSSIAVLSFIEATLNTTSDTQLFVELLLLIERLNNIPRPRLYAQVCQSCLMGLIDSAETNDELKWTAFTFLKIPQIFQRLKTFTQEGKDGREEIYQGFELLLRLQPLIDKADVKNNCDIMQQLLQECAKKDLIADAQTKKLLDKRAIDRKNLKTKQDPPPSQPNPTLILRAEPTVTNIIKTMEADYSKNQDMILGVLGHMMSGKSFELITAAAATTGKLHMFASRLIKFNEFAKHSSGEGSKVSLSRAVLFDISFLMLGYICVMYGTEIVCTTSAGAGNEPFFETWVGQSLPIDQKCRPVENMAHPDPARVESLLTQINSGQEIKTSLQRWQDVCTNIPFAIQEILTAWENGAVSADAVQKFCDNIKRHMCCLPVCIAAWLCSYMQGLTAPEREKPLKLLKHMLSPIQGDPTMSQYNESLMIHIIKKISGDLLSAKSSRVTGEAREGAGGADTGRQVYTGENNTQVYTGVFSHAMQLGWVDGRGICSADNMLTIGGARWFCHCAVKEILKCSRREDLIQSVNVALALFQLDSEPVAVALLSHVIPSLLLDSSKRDLLCNPRGAALARLAVQCTAMAFLTQSNDRRRNGKSRSRKRGRETDREYVVSPASSGSGKEDERPSKLRILLSAPENEAQNPAMQVNLPSYSSSEAPKLAAQISNVNFKEPLNHALVRLFQLFSDVLTDSSVGPHTAFVVSFVQESVRTGEQASKAILQFMPFSMLPALLQCSSGVFSPEDITLMGDLTLPMVRKVIAKAVCYYRPI
Length964
PositionTail
OrganismBranchiostoma floridae (Florida lancelet) (Amphioxus)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Cephalochordata> Leptocardii> Amphioxiformes> Branchiostomidae> Branchiostoma.
Aromaticity0.07
Grand average of hydropathy-0.159
Instability index45.74
Isoelectric point8.54
Molecular weight106361.20
Publications
PubMed=18563158

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25723
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     102.94|      34|     115|      65|      99|       1
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   65-   99 (54.64/34.91)	LQQAF..VGPTPNTLVL.....SYLRHALSSQVVSYgAFLNA
  175-  215 (48.30/26.15)	LQQAFyqLQQLPHGKALsppgqSHGHGALNSSIAVL.SFIEA
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     349.95|     106|     243|     281|     388|       2
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  281-  388 (175.15/127.79)	QRLKTFTQEGKDGREEI.YQGFELLLRLQPLIDKAD.VKNNCDIMQQLLqeCAKKDLIADAQTKKLLDKRAIDR.KNLK.TKQDPPPSQPNPTLILRAEPTVTNIIKTMEAD
  525-  634 (174.81/121.44)	QEIKTSLQRWQDVCTNIpFAIQEILTAWENGAVSADaVQKFCDNIKRHM..CCLPVCIAAWLCSYMQGLTAPEReKPLKlLKHMLSPIQGDPTMSQYNESLMIHIIKKISGD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25723 with Med24 domain of Kingdom Metazoa
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