<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25719

Description Uncharacterized protein
SequenceMSATNSVPNGCSLEDCHSNVFALTDLTGIKWRRLRAPCPAGVGPLEDPILSSFAKCLAADVFCVWRQRELWIFWYGDDPDLTDVLHPELKGTSHRGSCVSIVCFSSGLTAGCCCFLPSLFRYLLSADFVRLGRWFVRPYIQGTDKNDKCEYLSCAFSFFLHGESTVCTSVEIQEHQLVERLSMQHFNSVQGTAGGFHGEKARLELKAT
Length208
PositionMiddle
OrganismBranchiostoma floridae (Florida lancelet) (Amphioxus)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Cephalochordata> Leptocardii> Amphioxiformes> Branchiostomidae> Branchiostoma.
Aromaticity0.11
Grand average of hydropathy-0.002
Instability index29.43
Isoelectric point6.15
Molecular weight23169.24
Publications
PubMed=18563158

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IBA:GO_Central

GO - Biological Function
sugar transmembrane transporter activity	GO:0051119	IBA:GO_Central

GO - Biological Process
carbohydrate transport	GO:0008643	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25719
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.90|      15|      33|     113|     127|       1
---------------------------------------------------------------------------
  113-  127 (28.47/15.31)	CCFLPSLFRYLLSAD
  149-  163 (29.42/16.02)	CEYLSCAFSFFLHGE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25719 with Med13 domain of Kingdom Metazoa
Unable to open file!