<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25712

Description Heat shock protein 70kDa
SequenceMSAKVEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQTAQNPKNTVFDAKRLIGRKFSDPQVQADAKDFSFALVAGEAEKPMVQVEFHGETKTFSAEEISSMILTKMKEIAEAYLGKEIKNAVVTVPAYFNDSQRQATKDAAVIAGINCMRIINEPTAAAIAYGLDKKNDNGGAERNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDQRMMNHFVQEFKRKHKKDLTGNARALRRLRTACERAKRTLSSTAQTSIEIDSMFEGIDFYTSITRARFEELNMDLFRKCMEPVEKCLRDSKMDKSSVHEIVLVGGSTRIPKVQSLLSDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVSPLSMGLETVGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVFEGERSRTKDNNLLGKFELQGIPPAPRGVPQINVCFDIDANGILNVSAEDKSTGQKNKITITNDKGRLSKEEIERMVQEAEKYKAEDEEHKKKIEAKNGLENYAYNMKNTMNDENVGGKIDPDDKTKIMTAVEETIAWLDGNQTAEVDEFEDKMKELEGLCNPIISKMYQAGGGAPPGAGGMPDFGAGAEGAEGGGAAPGPKIEEVD
Length656
PositionUnknown
OrganismMicromonas pusilla (strain CCMP1545) (Picoplanktonic green alga)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Chlorophyta> Mamiellophyceae> Mamiellales> Mamiellaceae> Micromonas.
Aromaticity0.06
Grand average of hydropathy-0.442
Instability index34.92
Isoelectric point5.00
Molecular weight71634.08
Publications
PubMed=19359590

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25712
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.90|      28|     245|      79|     147|       1
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  118-  145 (46.83/69.13)	FSAEEISSMILTKMKEIAEAYLGK...EIKN
  517-  547 (42.07/ 7.61)	LSKEEIERMVQEAEKYKAEDEEHKkkiEAKN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      77.18|      18|      21|      38|      55|       2
---------------------------------------------------------------------------
   16-   33 (19.44/10.84)	..T..TYSCVGVWQHDRveIIA
   38-   55 (32.92/23.23)	NRT..TPSYVAFTDSER..LIG
   60-   78 (24.82/15.79)	NQTaqNPKNTVF.DAKR..LIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.56|      19|     245|      79|     108|       3
---------------------------------------------------------------------------
   79-  100 (25.30/31.66)	RKFSDPQVQAdAKDfsFALVAG
  152-  170 (34.27/12.52)	AYFNDSQRQA.TKD..AAVIAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      90.42|      31|     196|     361|     398|       5
---------------------------------------------------------------------------
  352-  386 (45.49/20.23)	KVQSLlsdfFNGKELCKSINPDEAVAYGAAVQAAI
  560-  585 (36.78/16.94)	.........MNDENVGGKIDPDDKTKIMTAVEETI
  595-  613 ( 8.15/ 7.15)	EVDEFedkmKELEGLCNPI................
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25712 with Med37 domain of Kingdom Viridiplantae
Unable to open file!