<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25696

Description Mediator of RNA polymerase II transcription subunit 4
SequenceMDAQLLTPLSTLETRLNNLLMAIISSPTAAGAPAAALALLDADDSLSRALETLHTHQSNYAKILRLRAEALSLEERVRNIVREVETVGNEISAACQHGADGSDDDSDDDSGIEEEAEQYGEDLDTHMGGVSEPSSTSLNSRGRRSKEVDYKLLVEFARRISRYNSDAAADASAVRSTRTPPGDEEQQHKQRDRSNVENGDAAERAAVGLGPDAAQQTKGVGVAALSQETVSWLDETANWSRDLSRMQYPSEDRIRMGLMGQLQAAVSEGLDVEKEIERLIRMSRDEGEGGSDDGAASEHAAVRGEIAGIVGEPGSFAGGGIGRRDAAMGGRAPMKAKPKPVLDLELYDPAEDD
Length353
PositionMiddle
OrganismParacoccidioides lutzii (strain ATCC MYA-826 / Pb01) (Paracoccidioides brasiliensis)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes> Eurotiomycetidae> Onygenales> Onygenales incertae sedis> Paracoccidioides.
Aromaticity0.03
Grand average of hydropathy-0.598
Instability index48.77
Isoelectric point4.58
Molecular weight37768.98
Publications
PubMed=22046142

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
ECO:0000256	RuleBase:RU364141
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro
GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP25696
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.15|      29|      31|     265|     295|       1
---------------------------------------------------------------------------
  267-  295 (49.57/28.14)	SEGLDVEKEIERLI.RMSRDEGEG.GSDDGA
  297-  327 (41.58/17.65)	SEHAAVRGEIAGIVgEPGSFAGGGiGRRDAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.55|      21|      31|     164|     189|       2
---------------------------------------------------------------------------
  164-  189 (25.40/28.07)	NSDAAADAsAVrstRTPPgDEEQQHK
  198-  218 (38.15/20.65)	NGDAAERA.AV...GLGP.DAAQQTK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.29|      19|      31|      34|      52|       3
---------------------------------------------------------------------------
   34-   52 (28.72/21.28)	AAALALLDADDSLSRALET
   68-   86 (29.56/22.13)	AEALSLEERVRNIVREVET
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25696 with Med4 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AAADASAVRSTRTPPGDEEQQHKQRDRSNVENGDAAERAAVGLGPDAAQQTKGVG
2) EKEIERLIRMSRDEGEGGSDDGAASEHAAVRG
3) ISAACQHGADGSDDDSDDDSGIEEEAEQYGEDLDTHMGGVSEPSSTSLNSRGRR
167
273
91
221
304
144










Molecular Recognition Features






MoRF SequenceStartStop




1) DYKLLVEFARRI
2) ERLIR
3) GGIGRRDAAMGGRAPMKAKPKPVLDLELYDPAEDD
149
277
319
160
281
353