<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25668

Description Heat shock 70 kDa protein
SequenceMAKVDGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQTAMNPKNTVFDAKRMIGRKFSDPQIQADIKDWSYTVVCGEAEKPMIQVEFHGEEKKFSAEEISSMILVKMKEIAEAYLGKEIKNAVVTVPAYFNDSQRQATKDAAVIAGINCMRIINEPTAAAIAYGLDKKDQNGGAERNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDQRLMNHFVQEFKRKHKKDITGNARALRRLRTSCERAKRTLSSTAQTSIEIDSLFEGVDFYTSITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSAVHEIVLVGGSTRIPKVQSLLSDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVSPLSMGLETVGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVFEGERSRTKDNNLLGKFELSGIPPAPRGVPQINVCFDIDANGILNVSAEDKSTGQKNKITITNDKGRLSKEEIERMVQEAEKYKAEDEEHKKKVEAKNGLENYAYNMKNTMNDENVGGKLDPDDKAKITAAVEEAISWLDGNQTAEIDEFEDKLKELEGVCNPIISKMYQGAGGAPPPGADFGGAGAGAEGPGAGPGPKIEEVD
Length652
PositionUnknown
OrganismMicromonas commoda (strain RCC299 / NOUM17 / CCMP2709) (Picoplanktonic green alga)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Chlorophyta> Mamiellophyceae> Mamiellales> Mamiellaceae> Micromonas.
Aromaticity0.06
Grand average of hydropathy-0.431
Instability index30.69
Isoelectric point5.03
Molecular weight71257.69
Publications
PubMed=19359590

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25668
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      77.03|      18|      21|      37|      54|       1
---------------------------------------------------------------------------
   15-   32 (19.45/11.26)	..T..TYSCVGVWQHDRveIIA
   37-   54 (32.41/23.65)	NRT..TPSYVAFTDSER..LIG
   59-   77 (25.18/16.74)	NQTamNPKNTVF.DAKR..MIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.95|      17|      17|     568|     584|       3
---------------------------------------------------------------------------
  378-  394 (25.36/17.25)	GAAVQAAI..LSGEGNEKV
  577-  595 (21.59/13.47)	TAAVEEAIswLDGNQTAEI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25668 with Med37 domain of Kingdom Viridiplantae
Unable to open file!