<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25661

Description GDSL esterase/lipase EXL3
SequenceMMQPHLPSPARLGLTASSPSLPPNPVPLNPTSSPSHGSLPSSAAAGTSAAPTLTTSPSLLPLLPPLPRAQSLLQLISSLASNLLELSANRAAWISAYRGSLPTFLPSASSAPPLATPISSTKDALSLVTTLQTQLFEAVAELQETLDLQDARARLVREARGKDAALLAFAKKLHEAHQVLDRLVDDYADYRRDPKRPRGAAAADDPEPASEGDFGTSLHSSLKLDDILTYAHRISYTTFAPPEHGAGLPLRVSLPPVPQENQMRASQLYLFADLDVGVPKKPLDAKDGIAAEVEVAPLYEAPQEGPSRLPNTLPPMFPKELKPPPGWKPGDPITLPLDEILPGIKGEEREAQAPVPQAPVSVRPVAPMGPETIQVKPVQLDFGSSSSDEYSSDVGSSEEDDED
Length403
PositionMiddle
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.04
Grand average of hydropathy-0.309
Instability index54.33
Isoelectric point4.86
Molecular weight42791.80
Publications
PubMed=19936069

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25661
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.57|      26|      37|      18|      44|       1
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    7-   39 (41.52/17.69)	PSPARlgltasSPSLPPNP..VPLNPtSSPSHGSL
   40-   72 (34.05/10.77)	PSSAA.agtsaAPTLTTSPslLPLLP.PLPRAQSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     145.22|      38|      38|     295|     332|       2
---------------------------------------------------------------------------
  240-  288 (29.82/ 7.28)	.........A.PP.EHGAGLPlrVSLPPV.PQEnqmrasqlylfadldvgvPKK..PLDAKDG
  293-  330 (76.09/28.48)	VEVA.PLYEA.PQ.EGPSRLP..NTLPPMFPKE..................LKP..PPGWKPG
  331-  370 (39.31/11.63)	DPITlPLDEIlPGiKGEEREA..QAPVPQAPVS..................VRPvaPMG..P.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     146.14|      38|      39|     127|     165|       3
---------------------------------------------------------------------------
   75-  124 (32.08/11.70)	LISSLASNL..........L.ELSANRAAWISAYRGslptflpsassapplatpisstKDA
  127-  164 (60.43/29.69)	LVTTLQTQLFEAVAELQETL.DLQDARARLVREARG......................KDA
  167-  202 (53.62/26.51)	L..AFAKKLHEAHQVLDRLVdDYADYR.RDPKRPRG......................AAA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25661 with Med4 domain of Kingdom Viridiplantae
Unable to open file!