<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25659

Description Lycopene epsilon cyclase1
SequenceMVETTQGALEAEMKEIFVPYRGFFNRNGVEVSEVVLEEADVSKAILGYITANKIQSIALGGANRNAFTKKFKNADVPSTLMKCAPDYCNIYVVAKGKSVNVRLAKCGVPPMHTGADIASDTDSLRESVLYMRRGSRGHLPRVTPDAWRSIDGRTPPELSTRPLFRERLLSSSATTKNFVVLPGKDNFETSSRSARHDSLGGDLDFGPSTRFSYIDLGENLDMSTTLPALEPMSPATGAQRDTEAEMRRLRLELKQTMDMYNAACKEAINAKQRAKEMHMMKLEEARRLEEARNAEEAALAVAEMEKAKCRAAMEAAEAAQRLADLEAQRRRNAEVRARREADEKVRALDAISNHDFRYRKYHIDEIEMATERFSDELKIGEGGYGPVYRASLDHTPVAIKVLRPDAHQGRKQFLQEVEVLSCIRHPNMVLLLGACPEYGCLVYEYMDHGSLEDRLFRRGGTPPLAWAQRFRIAAEIATALLFLHQTKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPSVADNVTQYRLTATAGTFCYIDPEYQQTGKLGVKSDIYSLGVLLLQVVTARPPMGLTHHVEKAIDAGTFEQMLDITVKDWPVEEALGYAKLALKCTEMRRRDRPDLATVILPELNRLRNLGHAYEARMSAARANGGSGESGAQISGDSTTVGGSWETADS
Length682
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.06
Grand average of hydropathy-0.401
Instability index43.88
Isoelectric point6.76
Molecular weight75778.48
Publications
PubMed=19936069
PubMed=19965430

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25659
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      98.03|      29|      30|     239|     267|       1
---------------------------------------------------------------------------
  214-  249 (30.77/20.06)	.IDLGE........NLDM..STTLPAlepmspatgaQR..DTEAEMRRL
  250-  282 (45.01/33.33)	RLELKQ........TMDMYNAACKEA......inakQR..AKEMHMMKL
  287-  331 (22.24/12.12)	RLEEARnaeeaalaVAEMEKAKCRAA...meaaeaaQRlaDLEAQRRR.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.17|      12|      28|     150|     161|       2
---------------------------------------------------------------------------
  150-  161 (21.74/14.62)	IDGRTPPELSTR
  181-  192 (21.43/14.30)	LPGKDNFETSSR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.45|      12|      20|     332|     343|       3
---------------------------------------------------------------------------
  332-  343 (19.68/12.66)	NAEVRARR.EADE
  353-  365 (17.77/10.67)	NHDFRYRKyHIDE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.41|      15|     316|     130|     147|       5
---------------------------------------------------------------------------
  130-  147 (29.50/21.11)	YMRRGS.......RGHLPrvtPDAW
  445-  466 (27.91/12.98)	YMDHGSledrlfrRGGTP...PLAW
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25659 with Med32 domain of Kingdom Viridiplantae
Unable to open file!