<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25636

Description Mediator of RNA polymerase II transcription subunit 17
SequenceMEKGDVLVDLDKLPMKRLEAIDETGNEHYPPDTSNEEQRLAAIRRIDFSWVIEKDAKKAKKAAEADTTQQAWPWQGLMESLQQAHQELSVVIDLIGTVEANDAMAVASTTKPKSQPNEILVDMAVCAATKLQCLRHLSRYFKQSATTMEQQFQKETRFYSSLIRLQQNWKVKRQRSVGSPGSEGFMFDLVDTSQLDTTTMPRLSPLSLIPIDQDSSGTLSVQIPQKCFHSLSLRFHGDIANNAESSAVKRKEGTLTNTTTGAENDVLENDDVNKSTEHAHSILRDIHKSIFEEQVFDMVIQETFIQSQGINVTGMCEDFLQLAIGQECSLCLSHDLSGQNNNSGTVGQEDHMDIDHTGNLAVATVNGKESSNKDVRGFPNPKSLEIYLLHVFHEGILRKLREKSRHVVRYQSSAQGTPDECGLLSHFCMTVSHRIFSSKVHLELESVVSRVPYLHLCSLPTWHSRTSSWSLCLKVPQPILATDRVRRPSDYSELKCKSRSQFGTKVILKDGQISLMGEGSPSIAGSLAGKPSDGRLVNSYNCDLEDLPMMLLQQVASQVIHWLHDEAVVLGMNATIDFLCLYLDLDQGETLGLVAHVDPDDTYGCVSWYLTLDHHPTEEGKMSAGSPELEERRFLGYLSPELLYSTLMDLVKLCSTGVQR
Length660
PositionHead
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.06
Grand average of hydropathy-0.362
Instability index44.42
Isoelectric point5.46
Molecular weight73694.57
Publications
PubMed=19936069
PubMed=19965430

Function

Annotated function 
GO - Cellular Component
core mediator complex	GO:0070847	IBA:GO_Central
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25636
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      56.03|      14|      15|     144|     157|       1
---------------------------------------------------------------------------
  127-  139 (15.33/ 7.47)	.AATKLQCLR.HLSR
  144-  157 (22.75/14.58)	SATTMEQQFQ.KETR
  161-  175 (17.95/ 9.99)	SLIRLQQNWKvKRQR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.99|      11|      21|     324|     334|       2
---------------------------------------------------------------------------
  324-  334 (21.52/14.08)	IGQECSLCLSH
  346-  356 (21.47/14.04)	VGQEDHMDIDH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     127.02|      37|     249|     201|     238|       3
---------------------------------------------------------------------------
  201-  238 (62.86/47.31)	PRLSPLSLiPI..DQDSSGTLSVQIPQKCFHSLSLRFHGD
  452-  490 (64.16/43.53)	PYLHLCSL.PTwhSRTSSWSLCLKVPQPILATDRVRRPSD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.43|      32|     160|     358|     403|       6
---------------------------------------------------------------------------
  358-  394 (51.91/54.46)	GNLAvatvnGKESSNKDVRGFP.NPKSLEIYLL........HVFHE
  525-  565 (48.52/23.84)	GSLA.....GKPSDGRLVNSYNcDLEDLPMMLLqqvasqviHWLHD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25636 with Med17 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




NANANA









Molecular Recognition Features






MoRF SequenceStartStop




1) QRLAAIRRIDFSWVIEK
38
54