<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25635

Description Pre-mRNA-processing protein 40C
SequenceMLKERGVAPFSKWEKELPKIVFDPRFKAIPSHSTRRAIFDHYVRTRAEEERKEKRAALKAAVEAYKELLEEASEDINQKTDYQEFKRKWGADTRFEALDRKEREILFSEKVKAVQEKVQSMRKAVIANFKSMLRESKDITSTSRWAKVKENFRSDPRYKAMKHEERETIFNEYIVELKSAEQEAEQAAKAKVDEQAKLKERERETRKRKEREEQEMERVKMKIRRKEAVSSYQALLVEMIKDPKASWTESKPKLEKDPQGRARNPDLGQGDAEKLFRDHVKDLYERCVRDFRALLSEVITPEVAARTTAEGKTAINSWSEAKGHLRSDLRYNKLPSKDKESIWRRYADDLTRKLRQSDTKEKDKSDTDGKQPRSSDPPRRR
Length381
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.07
Grand average of hydropathy-1.233
Instability index41.05
Isoelectric point9.61
Molecular weight45026.51
Publications
PubMed=19936069
PubMed=19965430

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25635
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     377.81|      85|     129|       1|      87|       1
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    1-   85 (125.74/72.50)	......................MLKErgVAPFSKWEKELPKIVFD.....PRFKA.IP..SHSTRRAIFDHY.VRTRAEEERKEKRAALKAAV..EAYKELLEEASEDINQKT.DYQEF
   86-  138 (56.10/26.01)	KR...........................................kwgadTRFEA.L...DRKEREILFSEK.VKA.VQEKVQSMR...KAVI..ANFKSMLRE.SKD...........
  139-  216 (99.42/51.18)	............................ITSTSRWAKVKENFRSD.....PRYKA.M...KHEERETIFNEYiVELKSAEQEAEQ.AA.KAKV..DEQAKLKERERETRKRKErEEQEM
  217-  321 (96.55/49.96)	ERvkmkirrkeavssyqallveMIKD....PKASWTESKPKLEKD.....PQGRArNPdlGQGDAEKLFRDH.VKDLYERCVRDFRALLSEVItpEVAARTTAEGKTAIN....SWSEA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25635 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AEQAAKAKVDEQAKLKERERETRKRKEREEQEMERVKMKI
2) SWTESKPKLEKDPQGRARNPDLGQGDAEKL
184
246
223
275










Molecular Recognition Features






MoRF SequenceStartStop




1) IFDHYV
2) KLRQSDTKE
3) RSSDPPRRR
4) SIWRRYADD
38
353
373
341
43
361
381
349