<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25635

Description Pre-mRNA-processing protein 40C
SequenceMLKERGVAPFSKWEKELPKIVFDPRFKAIPSHSTRRAIFDHYVRTRAEEERKEKRAALKAAVEAYKELLEEASEDINQKTDYQEFKRKWGADTRFEALDRKEREILFSEKVKAVQEKVQSMRKAVIANFKSMLRESKDITSTSRWAKVKENFRSDPRYKAMKHEERETIFNEYIVELKSAEQEAEQAAKAKVDEQAKLKERERETRKRKEREEQEMERVKMKIRRKEAVSSYQALLVEMIKDPKASWTESKPKLEKDPQGRARNPDLGQGDAEKLFRDHVKDLYERCVRDFRALLSEVITPEVAARTTAEGKTAINSWSEAKGHLRSDLRYNKLPSKDKESIWRRYADDLTRKLRQSDTKEKDKSDTDGKQPRSSDPPRRR
Length381
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.07
Grand average of hydropathy-1.233
Instability index41.05
Isoelectric point9.61
Molecular weight45026.51
Publications
PubMed=19936069
PubMed=19965430

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25635
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     377.81|      85|     129|       1|      87|       1
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    1-   85 (125.74/72.50)	......................MLKErgVAPFSKWEKELPKIVFD.....PRFKA.IP..SHSTRRAIFDHY.VRTRAEEERKEKRAALKAAV..EAYKELLEEASEDINQKT.DYQEF
   86-  138 (56.10/26.01)	KR...........................................kwgadTRFEA.L...DRKEREILFSEK.VKA.VQEKVQSMR...KAVI..ANFKSMLRE.SKD...........
  139-  216 (99.42/51.18)	............................ITSTSRWAKVKENFRSD.....PRYKA.M...KHEERETIFNEYiVELKSAEQEAEQ.AA.KAKV..DEQAKLKERERETRKRKErEEQEM
  217-  321 (96.55/49.96)	ERvkmkirrkeavssyqallveMIKD....PKASWTESKPKLEKD.....PQGRArNPdlGQGDAEKLFRDH.VKDLYERCVRDFRALLSEVItpEVAARTTAEGKTAIN....SWSEA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25635 with Med35 domain of Kingdom Viridiplantae
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