<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25619

Description Uncharacterized protein (Fragment)
SequenceNKTQKRVLALNRELPPRNEQFLINFEQLQSQFPDQDQLRSVTESVLISLVIQCCNHAPRAEFLLFALRSLCSIGYINWDTFLPSLLSSVSSAEMSAGQAGQTVSAISSMNSSQNVILPSSSAIPNSSNFQPSNPTSPLASVHGIGSPVQSAIEPSLLATVSPVKSSDISGNGQPSTSRVNLSSRDNAINSLRQLCCKIILTGLEFNLKPATHSEIFHHMLNWL
Length223
PositionTail
OrganismRicinus communis (Castor bean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Acalyphoideae> Acalypheae> Ricinus.
Aromaticity0.05
Grand average of hydropathy-0.067
Instability index60.62
Isoelectric point7.12
Molecular weight24188.14
Publications
PubMed=20729833

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of gene expression	GO:0010628	IBA:GO_Central
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25619
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     102.83|      33|      70|      83|     116|       2
---------------------------------------------------------------------------
   83-  116 (51.07/27.87)	PSLLSSVSSAEMS..AGQaGQTVSAISSMNSSQNVI
  154-  188 (51.76/24.78)	PSLLATVSPVKSSdiSGN.GQPSTSRVNLSSRDNAI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25619 with Med23 domain of Kingdom Viridiplantae
Unable to open file!