<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25617

Description Uncharacterized protein
SequenceMRHLIVEACIARKLIDTSAYFWPGYVTAHSTQMSHGVLSQVPGWSALMKGSPLTPSMISTLVATPASSLPEIEKVYEIALNGSNDEKISAATILCGASLVRGWNIQEHTMLFIIKLLAPPIPADYSGSESHLINYAPLLNVLLVGISSVDCVQILSLLGLVPLLAGVLMPICEVFGSSVPKVSWTLPSGEEISSHAVFSNAFSLLVRLWRFHLPPLENVMGDKTPVGSQRGPEYLLLLRNSQLASFGTLPGDRIKRRRYSKILNISLDPIFIDSFPRLKLWYRHHLQCIASTFSGLHGTPVHQLVDALLNMMFRRINRGVQSLTSATSGSSSSSGPGAEEAYVRLQVPAWDILEATPFALDAALTACAHGRLSPRELATGLKDLADFLPASLATIVSYLSAEVTRGIWKPAFMNGSDWPSPAANLSNVEQQIKKILSATGVNVPSLPVGGNSPATLPLPLAALVSLTITYRLDKVSERFLVLVGPALNALASGCPWPCMPIIAALWAQKVKRWSDFLVFSASSTVFHHNGDAVVQLLRSCFTSTLGFSPSHISSNGGIGALLGHGFGSHFSGGISPVAPGILYLRVHRSVRDVLFMTENILSILMQSVKEIASSGLTRDTVEKLKKTKYGMRYGQVSLAAAMMRVKLAASLGASLVWISGGSNLVQSLIKETLPSWFISSHGPEQGGVGESGELVALLGGYTLAYFAVLCGTFAWGVDSASPASRRRAKVLGSHLEFLASALDGKISLGCDWATARAYISGFLSLMIACTPKWVVEINVDLLKRLSKGLKKRNEEELALALLALGGVGAMGAAAELIIEIGF
Length822
PositionTail
OrganismRicinus communis (Castor bean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Acalyphoideae> Acalypheae> Ricinus.
Aromaticity0.08
Grand average of hydropathy0.322
Instability index43.49
Isoelectric point8.98
Molecular weight88052.42
Publications
PubMed=20729833

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25617
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.29|      22|      67|     374|     397|       1
---------------------------------------------------------------------------
  374-  397 (28.41/25.10)	PrELATGLKDLADfLPASLATIVS
  444-  465 (39.88/23.86)	P.SLPVGGNSPAT.LPLPLAALVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     190.25|      60|     246|     284|     356|       2
---------------------------------------------------------------------------
  284-  356 (95.32/71.22)	HH.....LQCIASTFSGLHG.TPVHQLVdallnmmfrriNRGVQSLTSATSGSSSSSG.....PGAeeAYVRLQVPAWDILEAT
  527-  597 (94.94/49.10)	HHngdavVQLLRSCFTSTLGfSPSHISS...........NGGIGALLGHGFGSHFSGGispvaPGI..LYLRVHRSVRDVLFMT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     120.85|      39|      59|     710|     749|       4
---------------------------------------------------------------------------
  710-  749 (61.81/38.64)	CGTfAWGVDSASPASRRRAKVL....GSHLEFLASALDGKISLG
  769-  811 (59.04/32.31)	CTP.KWVVEINVDLLKRLSKGLkkrnEEELALALLALGGVGAMG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     153.67|      47|     553|      96|     145|       5
---------------------------------------------------------------------------
   96-  145 (74.64/47.19)	GASLVrgWnIQEHTMLF..IIKLLAPPIPADYSGSESHLINYAPLLNVLLVG
  652-  700 (79.03/40.70)	GASLV..W.ISGGSNLVqsLIKETLPSWFISSHGPEQGGVGESGELVALLGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.27|      18|      70|     191|     209|       6
---------------------------------------------------------------------------
  191-  209 (27.96/19.10)	EISSHAVFSNAFSLLvRLW
  264-  281 (34.30/19.42)	NISLDPIFIDSFPRL.KLW
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25617 with Med33 domain of Kingdom Viridiplantae
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