<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25615

Description Uncharacterized protein
SequenceMDQNQRSIAATTAASRGYQFQPARAAIIDLFNLYLGRSSRQKHDDSTREPPNKTQKRVLALNRELPPRNEQFLINFEQLQSQFPDQDQLRSVTESVLISLVIQCCNHAPRAEFLLFALRSLCSIGYINWDTFLPSLLSSVSSAEMSAGQAGQTVSAISSMNSSQNVILPSSSAIPNSSNFQPSNPTSPLASVHGIGSPVQSAIEPSLLATVSPVKSSDISGNGQPSTSRVNLSSRDNAINSLRQLCCKIILTGLEFNLKPATHSEIFHHMLNWLVNWDQRQHGVDESDSVRSWRPEKALIEWLRSCLDVIWLLVDENKCRVPFYELLRSGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAANLRYSPITYPSVLGEPLHGEDLANSIQRGSLDWERALRCIRHALRTTPSPDWWKRVLLVAPSYRNPAHGPTPGAVFVSSMICEATIDRIVELLKLTNSEVNCWQEWLVFSDILFFLMKSGCIDFVDFVDKLVARLTEGDQHILRTNHMTWLLAQIIRVEIVVNALTTDARKVETTRKIMSFHREDRSSDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNSEQLQKGKQIDEWWRTVTKGDRMIDYMNMDDRSIGMFWVVSYTMSQPACETVVNWLSSAGVSELAGTSMQSNERLMVMREVNPLPISLLSGLSLNLCLKLVFQLEDSLFAGQVIPSIAMVETYCRLLLIAPHSLFRSHFSHLAQRYPSLLSKPGVTLLVFEIVNYRLLPLYRQEHVEYQGKSKSLMYDVTKIVSTLKGKRGDHRVFRLAENLCMNLILSLRDFFSVKREGKGPTEFTETLNRVTVITLAIIIKTRGIADADHLLYLQTMLEQIMATSQHTWSEKTLRYFPSLLHDALSGRIDKRGLAIQEWQQTETTVINQCTQLLSPSAEPAYVMTYINHSFPQHRQYLCAGAWILMQGHPENINSVNLARVLREFSPEEVTSNIYTMVDVLLHRIQMELQHGHSLQDLLLKTCANLAFFVWGHELLPLDILLLALTDRDDDPHALRIVISLLDRQELQQRVKLFCMNRGPPEHWLFSGVFKRLELQKALGNHLSWKDRYPTFFDDIAARLLPVIPLIVYRLVENDAIDPADRVLAMYSPFLAYHPLRFTFVRDILAYFYGHLPGKLIVRILNVLDLSKIPFSESFPQHISSSNPVMCPPPEYFATLLLGLVNNVLPPLNTNSKYGSLGDGLCNSLRNPNTKTPATSQSGPTNISDAQKAFYQIQDPGTYTQLVLETAVIELLSLPVTASQIVSSLVQIVVNIQPTLIQSSNGLHGASNGAGQGSVLPTSPSGGSTDSLGASRSNPSVSGINTATFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHLQLYMEASRIIKESWWLTDAKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHAIVKHLRPITSVAMLRIAFRIMGPLLPRLANAHSLFNKTLLLLLNTMVDVFGRNSQPSTPVEASEIADLIDFLHHVIHYEGQGGPVQANSKPRAEVLALCGRAAESLRPDIQHLLSHLKPDVNSSIYAATHPKLVQNPS
Length1613
PositionTail
OrganismRicinus communis (Castor bean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Acalyphoideae> Acalypheae> Ricinus.
Aromaticity0.08
Grand average of hydropathy-0.073
Instability index46.19
Isoelectric point6.61
Molecular weight180960.68
Publications
PubMed=20729833

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of gene expression	GO:0010628	IBA:GO_Central
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25615
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     447.77|     144|     180|     311|     479|       1
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  311-  469 (223.07/152.83)	WLLVDEnkcrVPFYeLLRSG.LQFIENIPDDEALFT.LILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAANLRYSPITYPSVLgepLhgeDLANSIQRGSLdW..ERALRCIRHA..LRTTPSPD.WWKRVL....LVapSYRNpAHGPTPGAVFV
  498-  652 (224.71/124.80)	WLVFSD....ILFF.LMKSGcIDFVDFVDKLVARLTeGDQHILRTNHMTWLLAQIIRVEIVVNALTTDARKVETTRKIMSFHREDRSSDPNNPQSIL...L...DFISSCQNLRI.WslNTSTREYLNSeqLQKGKQIDeWWRTVTkgdrMI..DYMN.MDDRSIGMFWV
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     380.50|     146|     624|     719|     945|       2
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  721-  896 (145.38/168.97)	.................................LFAGqvipsiamveTYCRLLLiapHSLFRSHFShLAQRYPS........LLskPGVTL......................LVFEIVNY.......RLLPLYRQ.....EHVEYQGKSkslmydvtkivstlkgkrgdhrvfrlaENL.CMNLILSLRDFfsvkregkGPTEFTEtlnrvTVITLAIIIKTRGIADADHLLYLQTMLEQIMAT.SQHTWSE
  897- 1038 (162.49/127.20)	KTLRYFPSLL.HDALSGRI....dKRGlAIQEW..........................................................qqtettvinqctqllspsaepaYVMTYINH.......S.FPQHRQylcagAWILMQGHP...........................ENInSVNLARVLREF........SPEEVTS.....NIYTMVDVLLHRIQMELQHGHSLQDLLLKTCANlAFFVWGH
 1058- 1152 (72.62/26.61)	HALRIVISLLdRQELQQRVklfcmNRG.PPEHWLFSG..........VFKRLEL...QKALGNHLS.WKDRYPTffddiaarLL..PVIPL......................IVYRLVENdaidpadRVLAMY.......................................................................................................................
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     228.61|      72|     180|    1214|    1321|       3
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 1228- 1307 (110.50/129.94)	NVLPPLNTNSKYGSLGDGLCN.SLRNPNTKTpATSQSGPTNisdAQKAFYQIQDPGtytqLVLETAVIEL.LSLPVTASQIV
 1339- 1412 (118.11/62.64)	SVLPTSPSGGSTDSLGASRSNpSVSGINTAT.FVSRSGYTC...QQLSCLLIQACG....LLLAQLPPDFhLQLYMEASRII
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     172.99|      53|    1456|      52|     142|       4
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   52-  104 (89.59/69.40)	NKTQKRVLALNRELPPRNEQF......LINFEQLQSQFPDQDQLRS.VTESVLISLVIQC
  247-  306 (83.40/67.67)	CKIILTGLEFNLKPATHSEIFhhmlnwLVNWDQRQHGVDESDSVRSwRPEKALIEWLRSC
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     158.56|      49|      70|     118|     167|       5
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  118-  167 (81.52/48.43)	LRSLCSIGYINWDTFLPSLLSSVSSAEMS..AGQaGQTVSAISSMNSSQNVI
  189-  239 (77.03/41.83)	LASVHGIGSPVQSAIEPSLLATVSPVKSSdiSGN.GQPSTSRVNLSSRDNAI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25615 with Med23 domain of Kingdom Viridiplantae
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