<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25608
Description |
Mediator of RNA polymerase II transcription subunit 14 |
Sequence | MAELGQQTVEFSTLVSRAAEESYLSLKELVDKSKSAEQSDSEKKINLLKFLVKTQQRMLRLNVLAKWCQQVPLIQYCQHLQSTLASHDTCFTQAADSLFFMHEGLQQARAPIYDVPSAIEVLLTGSYQRLPKCIEDVGVQSTLTEEQQQPALKKLDTIVRSKLLEVTLPKEISEVKVSDGTALLRVNGEFKVLVTLGYRGHLSMWRILHLELLVGERSGLVKLEESRRHVLGDDLERRMAAAENPFMILYSVLHELCISLIMDTVIRQVQALRQGRWKDAIRFELISDGSTGSTLLNQDGETDSVGLRTPGLKIMYWLDLDKNSGTSDSGSCPFIKIEPGPDLQIKCVHSTFVIDPINGREAEFSLDQSCIDVEKLLLRSICCNRYTRLLEIQKELGKNAQIFRAAGDVVLQSCMDEADVDYKKKETKTGDREFEGQEVLRVRAYGSSFFTLTINIRNGRFLLKLSQNILAAETVTEYEEALNQGSMTAAEVFINLRSKSILHLFASIGRFLGLEVYEHGFTIVKVPKNLLNGSTTLLMGFPDSGSAYFLLVQLDKDFKPLFQLLETQSDPSKGHSFNDLDNVMRIKKIDVSQMLMLEDELNMSLLDRGKLNGLLVNARGSNQTSEHGILSEFSLEGPMQTVGCPPSSFSYVVDEVFELEKGLSAPSYPLQNLSSFNASPASRFGSVSMNLHTVKAGSPSPKWEGGLQVSQMSNIVKVSSTSPHYNGSLYPSNSLKGPVHSVSFSSPSPGLGRNTTIRKLPASKSDQDLASLRSPHSVEVAQAAGDNAICHFPGHNVSKHDKNPRKRTVSDMLNFIPSLQNIDAQVGFAKRRRTSESVHSQQHSAKILILPEIAFKHEGYSYGDLIAEANKGNAPSSIYVSALLHVVRHCSLCIKHARLTSQMEALEIPYVEEVGLRNASSNIWFRLPFARGDSWQHICLRLGRPGSMYWDVKINDQHFRDLWELQKGSSGTPWGSGVRIANTSDVDSHIRYDLEGVVLSYQSVEADSIKKLVADIRRLSNARMFALGMRKLLGVKPDEKLDESSANSDVKVPVGGKSVEAADKLSEQMRRAFKIEAVGLMSLWFSFGSGVLARFVVEWESGKEGCTMHVSPDQLWPHTKFLEDFINGAEVASLLDCIRLTAGPLHALAAATRPARAGPAPGVPGGTSAIASMPKQAGYVQSQGGNPSSSTNNVSQPIAGPVGNTVASTGTGPLGNHSLHGAAMLAAGGRGGPGIVPSSLLPIDVSVVLRGPYWIRIIYRKNFSVDMRCFAGDQVWLQPATPPKEGPKVGGSLPCPQFRPFIMEHVAQELNGLDPGFAGGQQPVGLATSAPSNPSSGSQLGANGNRVNLASSAALSRAANQVAALNRVGNAVPGSSSLAVVSAGLPIRRSPGAGVPAHVRGELNTAIIGLGDDGGYGGGWVPLVALKKVLRGILKYLGVLWLFAQLPDLLKEILGSILKDNEGALLNLDQEQPALRFFVGGYVFAVSVHRVQLLLQVLSVKRFHHQQQQQQQQNSVTSQEELIQSEIAEICDYFSRRVASEPYDASRVASFITLLTLPISVLREFLKLIAWKKGMTQVQGGEIAPGQKPRIELCLENHAGLSENDNSENSSAAKSNIHYDRPHNSVDFALTVVLDPALIPHVNAAGGAAWLPYCVSVRLRYSFGENTNVTFLGMEGSHGGRACWLRIDDWEKCKQRVIRTVEVNGSTTGDVAQGRLRMVADSVQRTLHMCLQGLRDGGVTGSSGAT |
Length | 1746 |
Position | Tail |
Organism | Ricinus communis (Castor bean) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta>
Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae>
rosids> fabids> Malpighiales> Euphorbiaceae> Acalyphoideae> Acalypheae>
Ricinus.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.166 |
Instability index | 43.87 |
Isoelectric point | 7.58 |
Molecular weight | 190627.27 |
Publications | PubMed=20729833
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU365082
|
GO - Cellular Component | core mediator complex GO:0070847 IBA:GO_Central
mediator complex GO:0016592 IBA:GO_Central
|
GO - Biological Function | transcription coregulator activity GO:0003712 IBA:GO_Central
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IBA:GO_Central
|
Interaction
Repeat regions
Repeats |
>MDP25608
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 100.41| 29| 208| 1149| 1214| 1
---------------------------------------------------------------------------
1149- 1177 (51.25/15.23) AAATRPARAG.PAPG.VPGG.....TSAIASMPKQA
1220- 1237 (12.01/49.29) HGAAMLAAGGrGGPGiVP..................
1383- 1414 (37.16/ 7.56) ..AGLPIRRS.PGAG.VPAHvrgelNTAIIGLGDDG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 817.94| 213| 217| 450| 666| 2
---------------------------------------------------------------------------
260- 442 (231.72/168.46) ............................LIMDTVIRQVQALRQGRWKDAIRFELISDGSTgSTLLNQDGETDSVGLRTPGLKIM.YWLDLDKNS.....GTSDSGSCPFIKIEPGPDLQ.......IKCVHSTfvIDPI....NGREAEfSLDQ....SCIDVEKLLLRSICCNryT..RLLEIQKELGK..NAqifRAAG..DVVLQS....CMDE..ADVDYKKKETKTGDREFE..GQEVLRV.......
450- 666 (332.81/265.58) FTL....TINI....RNGRFLLKLsQNILAAETVTEYEEALNQGSMTAAEVFINLRSKSI.LHLFASIGRFLGLEVYEHGFTIVKVPKNLLNGSTTLLMGFPDSGSAYFLLVQLDKDFKPL.....FQLLETQ..SDPS....KGHSFN.DLDNVMRiKKIDVSQMLMLEDELN..M..SLLDRGKLNGLLVNA...RGSN..QTSEHG....ILSE..FSLEGPMQTVGCPPSSFSYvVDEVFELEKGlSAP
668- 875 (253.41/185.83) YPLqnlsSFNAspasRFGSVSMNL.HTVKAGSPSPKWEGGLQVSQMSN...IVKVSSTSP..HYNGSLYPSNSLKGPVHSVSFSS.PSPGL.GRNTTIRKLPASKS........DQDLASLrsphsVEVAQAA..GDNAichfPGHNVS.KHDKNPR..KRTVSDM......LN..FipSLQNIDAQVGFAKRR...RTSEsvHSQQHSakilILPEiaFKHEG...........YSY.GDLIAEANKG.NAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 59.02| 21| 22| 1324| 1345| 3
---------------------------------------------------------------------------
1324- 1345 (33.36/21.98) VGLATSAPSNPSSgSQLGA.N..GN
1347- 1370 (25.65/11.40) VNLASSAALSRAA.NQVAAlNrvGN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 67.86| 20| 355| 1083| 1128| 7
---------------------------------------------------------------------------
1104- 1128 (31.87/48.80) EGCTMHVspDQLWPHTKFledFING
1462- 1481 (35.99/ 7.45) EGALLNL..DQEQPALRF...FVGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 50.02| 14| 26| 933| 950| 8
---------------------------------------------------------------------------
933- 950 (20.77/25.47) DSWQhicLRLGRPGSmYW
961- 974 (29.26/16.48) DLWE...LQKGSSGT.PW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 33.63| 10| 19| 1178| 1191| 9
---------------------------------------------------------------------------
1178- 1191 (14.50/16.64) GYVqsqgGNPSSST
1200- 1209 (19.14/ 9.06) GPV....GNTVAST
---------------------------------------------------------------------------
|