<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25604

Description "Transcription cofactor, putative"
SequenceMDTNNWRPTAQGGEPAVDTGDWRATLQPDSRQRIVNKIMETLKRHLPFSGQEGLEELKKIAVRFEEKIYTAATSQSDYLRKISLKMLTMESKSQNNVPNSVPPNPFGNNNRPPDPGASQSMQPQVHNQGQSLPVPLSANQTQTRQQLLSQNIQNNMASTGIQSSAGLTSALPPVSGLAQTSIPNVVGQNSNMQNISGVPQNSAGNSLGQGVPSNMFANSQRQMPRQQVVPQQQQQQSQNPTQYMYQQQQIQQQLMKQKFQQGNLPPNNLVQSHLQQQQQQQQQNLLQPAQLQSSQQSSMQTSSVMQPSLMQSAPLSGLQQNQPSTVQQSAQSMLQQHPQSVLRQQQQPQQASSIHQQQASMMQQSLLPHHHQQQQQQQLMGQQQNATNMQQNQLIGQQNNVGDMQQQQQRLLGQQNNIQNLQQQHQQHQQQQQQQLMAQQNNLSSMHQQQLGSQSNVSGLQQQQQHLLGTQPGNSGMQTNQQSMHMLQRPKVPLQQQTHQSASNLLPTQGQQPQPQPQLPQQQLPSQIQSQPTQLQQQLALQQQSNTLQRDMQAGLQASSQAPSSLTQQQNVIDQQKQLYQSQRPLPETSSTSLDSTAQTGHANAVDVQEEVYQKIKAMKEMYFPELNEMYHKIATKLQQHDSLPQPPKTEQLEKLRLFKSMLERIITFLQVPKSSVMPSFREKLGSYEKQIINFINTNRPKRQITSMQQGQLSQPQIQQPQSQVPQVQSHESQMNPQMQSMNMQGSVQTMQQNNMSSLQQTPLPSLSGVSSSQQSMMSSMQSASNLDSVQGNVMSSLQQGGLGSHQQNPVSSAQQANIPNLSSQSGVNMLQPNISLQSNSNMLQHQHLKQHQEQQMLKQQFQHRHMQQHLIQKQQILQQQQQQQQQQQQQQQQLHQQSKQQLPAQMQAHQMPQVHQMNDVNDLKIRPGMGVKPGVFQQHLSAGQRTTYPHQQMKPGASFPISSPQLLQAASPQLTQHSSPQIDQQNLLSSLTKTGTPLQSANSPFVVQSPSTPLAPSPMPGDSEKPITGISSLSNAGNIGQQQATVAQAPVPSLAIGTPGISASPLLAEFTGSDVGLANTLTTASGKSTVTEQPLERLIKAVKSMSPKALSASVSDIGSVVSMIDRIASSAPGNGSRAAVGEDLVAMTNCRLQARNFITQDGMSGTRKMRRYTSAMPLNVVSSASSISDSFKQFNGAETSELESTATSSVKRPRLEANHALLEEIREINQRLIDTVVDISEEDVDPTAGAATAGGGEGTIVKCSFSAVALSPNLKSQYASAQMSPIQPLRLLVPTNYPNCSPILLDKLPVEVSKEYEDLSVKAKSRFNISLRSLSQPMSLGEIARTWDVCARAVISEHAQQSGGGSFSSKYGTWENCLSAA
Length1382
PositionTail
OrganismRicinus communis (Castor bean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Acalyphoideae> Acalypheae> Ricinus.
Aromaticity0.03
Grand average of hydropathy-0.780
Instability index75.85
Isoelectric point9.36
Molecular weight152388.73
Publications
PubMed=20729833

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25604
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     547.34|      52|      54|     364|     415|       1
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  195-  238 (50.93/ 6.44)	ISGVP..QN..SAGNS.LGQ..GV..PSNMFANSQRQM..PRQQ..V..VPQQ...........QQQQ....SQ
  239-  287 (56.84/ 8.13)	N...PtqYM..YQQQQiQQQLMKQ..KFQQGNLPPNNL..V..QSHL..QQQQ...........QQQQQNLLQ.
  288-  328 (49.45/ 6.01)	....P..AQ..LQSSQ.QSS.M.....QTSSVMQPS.L..M.QSAPL..SGLQ...........QNQPSTV.QQ
  331-  363 (49.52/ 6.03)	QSML.........QQH.PQSVLRQ..QQQP...QQA........SSI.....H...........QQQASMM..Q
  364-  415 (100.61/20.70)	QSLLP..HH..HQQQQ.QQQLMGQ..QQNATNMQQNQL..IGQQNNV..GDMQ...........QQQQRLLGQQ
  419-  471 (81.35/15.17)	QNLQQ..QHqqHQQQQ.QQQLMAQ..QNNLSSMHQQQL...GSQSNV..SGLQ...........QQQQHLLGTQ
  512-  561 (55.65/ 7.79)	Q...P..QP..QPQLP.QQQLPSQ.iQSQPTQLQQ.QL.aLQQQSNTlqRDMQ...........AGLQ..ASSQ
  683-  729 (50.99/ 6.45)	EKLGS..YE..KQIIN.FINTNRP..KRQITSMQQGQL..SQPQ.......IQ...........QPQSQVPQVQ
  882-  946 (52.02/ 6.75)	QQ..Q..QQ..QQQQQ.QQQLHQQskQQLPAQMQAHQMpqVHQMNDV..NDLKirpgmgvkpgvFQQHLSAGQR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.30|      10|      17|       2|      11|       6
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    2-   11 (21.68/13.66)	DTNNWRPTAQ
   18-   27 (20.63/12.68)	DTGDWRATLQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      75.66|      15|      15|     997|    1011|       7
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  997- 1011 (26.10/11.77)	TPLQSANSPFVVQSP
 1013- 1027 (27.03/12.48)	TPLAPSPMPGDSEKP
 1052- 1066 (22.53/ 9.03)	VPSLAIGTPGISASP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     160.67|      49|      70|      73|     122|       8
---------------------------------------------------------------------------
   73-  121 (82.92/31.65)	TSQSDYLRKISLKMLTMESKSQNNVPNSVPP.NPFGNNNRPPDPGASQSM
  143-  192 (77.75/32.44)	TRQQLLSQNIQNNMASTGIQSSAGLTSALPPvSGLAQTSIPNVVGQNSNM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     179.05|      45|      70|    1073|    1118|       9
---------------------------------------------------------------------------
 1073- 1118 (67.76/46.95)	GSD.VGLANT......LTTASGKSTVT...EQP.LE...RLIKA.....VKSMSPKaLSASVSD.....I
 1119- 1141 (33.60/17.46)	GSV.VSM...........................ID...R.........IASSAPG..NGSRAA.....V
 1142- 1196 (40.17/22.30)	GEDlVAMTNCrlqarnFITQDGMSGT.....RK.MR...RYTSAmplnvVSSAS......SISDsfkqfN
 1197- 1240 (37.52/20.35)	GAE...............TSELESTATssvKRPrLEanhALLEE.....IREINQR.LIDTVVD.....I
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     105.84|      24|      85|     479|     508|      10
---------------------------------------------------------------------------
  479-  505 (38.07/15.95)	TNQQSMHmlqRPKVPLQQQTHQSASNL
  567-  586 (33.99/ 7.89)	TQQQNV.......IDQQKQLYQSQRPL
  596-  619 (33.78/ 9.92)	STAQTGH...ANAVDVQEEVYQKIKAM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.83|      18|      19|    1285|    1302|      13
---------------------------------------------------------------------------
 1285- 1302 (32.85/21.73)	SPIQPLRLLVPTNYPNCS
 1304- 1321 (27.98/17.34)	ILLDKLPVEVSKEYEDLS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.62|      23|     113|     625|     648|      15
---------------------------------------------------------------------------
  625-  647 (41.61/25.45)	PELNEMYHKIATKLQQHDSLPQP
  657-  679 (39.01/18.19)	RLFKSMLERIITFLQVPKSSVMP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.50|      16|      58|     746|     761|      18
---------------------------------------------------------------------------
  746-  761 (30.13/13.84)	GSVQTMQQNNMSSLQQ
  801-  816 (29.37/13.26)	GGLGSHQQNPVSSAQQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25604 with Med15 domain of Kingdom Viridiplantae
Unable to open file!