<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25602

Description Uncharacterized protein
SequenceMLSSRWSHFMHMDHTLLALCKEVAGREXXSGWTRDVDIFLQWLAAIPFAGGGFSDAAIAEGLSEALMMMFPFVPNGSQAQQNIDGQRHCILIAASNPHPLPTPVYRQQIQNLEQNENIDPQTESRLSDAETIAKSFPQCSVSLSVICPKQLPKLRAIYNAGKRNSRAADPTVDNVKNPHFLVLISENFMEARAALSRPGVANLPSNQSPVKMDVASVTSVAGPTSPSIPSVNGSIMSRPSIGNVPTATVKVEPTTVTSMAPGPAFPHIPSTRPASQSVPSLQTSSPPTSTQEIITSSENVSEIKPTVSGMPHSVRPVPPGAANVSILNNLSQARQVMNSAALTGGTSIGLPSINQTPVAMHMSNMISSGMASSVPAAQTVFSSGQTGITSITGSGTLTGTTQIAPNSGLGSFTSTTTNVSGNSNLGMSQPMGNLQAGVSMGQSVPGMSQGNLSGAQMVQSGIGMSQNMMSGLGPSVVSSGASTMIPTPGMGQPAQTGIQSLGVNNNSAANMPLSQQTASALQSAQSKYVKVWEGNLSGQRQGQPVFITRLEGYRSGSASET
Length561
PositionUnknown
OrganismRicinus communis (Castor bean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Acalyphoideae> Acalypheae> Ricinus.
Aromaticity0.04
Grand average of hydropathy-0.149
Instability index57.18
Isoelectric point8.36
Molecular weight58051.94
Publications
PubMed=20729833

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25602
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.47|      15|      16|     440|     454|       1
---------------------------------------------------------------------------
  440-  454 (31.99/15.44)	MGQSVPGMSQGNLSG
  457-  471 (23.49/ 9.10)	MVQSGIGMSQNMMSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     186.96|      36|      38|     195|     230|       2
---------------------------------------------------------------------------
  195-  230 (66.44/29.84)	LS..............RPGVANLPSNQSPVKMDVASVT.....SVA..........GPTSPSIPS
  236-  270 (56.09/24.05)	MS..............RPSIGNVPT..ATVKVEPTTVT.....SMA.........pGPAFPHIPS
  288-  352 (37.73/13.78)	TStqeiitssenvseiKPTVSGMPHSVRPVPPGAANVSilnnlSQArqvmnsaaltGGTSIGLPS
  354-  375 (26.69/ 7.60)	.........................NQTPVAMHMSNMI.....S.S..........GMAS.SVP.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.32|      23|      23|     387|     409|       3
---------------------------------------------------------------------------
  387-  409 (38.20/19.09)	GITSITGSGTLTGTTQIAPNSGL
  491-  513 (35.12/16.88)	GQPAQTGIQSLGVNNNSAANMPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.28|      22|      39|      92|     128|       6
---------------------------------------------------------------------------
   96-  120 (37.75/36.16)	NPHPLP..TPVYRQQIQNleqNENIDP
  147-  170 (34.53/10.93)	CPKQLPklRAIYNAGKRN...SRAADP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25602 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ALSRPGVANLPSNQSPVKMDVASVTSVAGPTSPSIPSVNGSIMSRPSIGNVPTATVKVEPTTVTSMAPGPAFPHIPSTRPASQSVPSLQTSSPPTSTQEIITSSENVSEIKPTVSGMPHSVRPVPPGAANVSILNN
2) GITSITGSGTLTGTTQIAPNSGLGSFTSTTTNVSGNSNLGMSQPMGNLQAGVSMGQSVPGMSQGNLSGAQMVQS
3) MMSGLGPSVVSSGASTMIPTPGMGQPAQTGIQSLGVNNNSAANMPLSQQT
4) QVMNSAALTGGTSIGLPSINQTPVAMHMSNMISSG
194
387
468
335
329
460
517
369










Molecular Recognition Features






MoRF SequenceStartStop




1) GPKIEEVD
642
649