<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25594
Description |
Mediator of RNA polymerase II transcription subunit 13 |
Sequence | MHNRYQDDWLKTPASSLQLWEKAPFEPYASPKPITYCVICPDIDPLTSAAADFFQQLGTGECELGLIKEFSPSVYETCKLGTHQPQSLGNQMEIDTGKLSYSGFVLLDCPQSMKIESSNTSLVGSISDYFLSLSNGWDMTSYLKSLSKAVKALKIGPCLSTNPKEGNTGPCMVIYVVCPFPEPIAVLQTVIESSVAVGSTFLSSDRERRQALLSQVGKALSCSAVVDEASPSNVLVLAGFSVPKLVLQIVTVDAIFRVASPALNELVILKETAFTVYNKARRISKGFSNDVQSSTLSGRSHSVIPQMNSIPAMWKDCVGPRLGGPTLPREGEMDAGLRSGFMQSSSSAVSADTGSSSQLDGSEPDGLGGGYQKTLPGLHCCYGWTEDWRWLVCIWTDARGELLDSHIFPFGGISSRQDTKGLQCLFVQVLQQGCQILQACSSPDIAAAKPRDFVITRIGNFFELEYLEWQKAIYSVAGSEVKKWPLQLRRSMPDGMPASSNGANLQQQEMSLMQERNLPSSPSPLYSSHSKGSGFMKGGLGQSSGRKQLIGGHTVVDNSRGMLQWVQSISFATISIDHSLNLVFQADSPSPGGTQGGSGVGASGYLEGFTPVKSLGSTSASYILIPSPSMRFLPPTPLQLPTCLTAESPPLAHLLHSKGSAIPLSTGFVVSKAVPSMGKDYRSNSREEWPSVLSVSLIDYYGGTNIAQEKLSRGTGKQGVRTLSSEVRDYEIEIHLILESIAAELHALSWMTVSPAYLERRTALPFHCDMVLRLRRLLHFADKELSSQPDKSQL |
Length | 794 |
Position | Kinase |
Organism | Ricinus communis (Castor bean) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta>
Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae>
rosids> fabids> Malpighiales> Euphorbiaceae> Acalyphoideae> Acalypheae>
Ricinus.
|
Aromaticity | 0.08 |
Grand average of hydropathy | -0.127 |
Instability index | 55.35 |
Isoelectric point | 6.30 |
Molecular weight | 86021.06 |
Publications | PubMed=20729833
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364134
|
GO - Cellular Component | mediator complex GO:0016592 IBA:GO_Central
|
GO - Biological Function | transcription coregulator activity GO:0003712 IBA:GO_Central
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IBA:GO_Central
|
Interaction
Repeat regions
Repeats |
>MDP25594
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 115.18| 36| 198| 471| 511| 1
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471- 511 (56.14/39.33) KAIYSVaGSEVK.....KWPLQLRRSMPDGMpassNGANLQQQEMS
672- 712 (59.04/29.58) KAVPSM.GKDYRsnsreEWPSVLSVSLIDYY....GGTNIAQEKLS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 284.75| 66| 66| 109| 174| 3
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40- 105 (82.30/42.60) CPDIDPLTSAA.......ADFFQQLGTGECELGLIKEFSPSVyETCKLGTHQPqslGNQMEIDTGKlsySGFV
109- 174 (112.68/60.82) CPQSMKIESSNTSLVGSISDYFLSLSNGWDMTSYLKSLSKAV.KALKIGPCLS...TNPKEGNTGP...CMVI
178- 237 (89.77/47.08) CPFPEPIAVLQTVIESSVAVGSTFLSSDRERRQAL..LSQVG.KAL...SC.S...AVVDEASPSN...VLVL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 106.23| 30| 41| 353| 382| 6
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353- 382 (56.65/30.70) TGSSSQLDGSEPDGLGG.GYQKTLPGLHCCY
396- 426 (49.58/25.97) TDARGELLDSHIFPFGGiSSRQDTKGLQCLF
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