<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25592

Description "Protein binding protein, putative"
SequenceMDPPRNFVPPMPMQFRPVVPAQQSQQFIPVASPHFQPVGRGVPLMNAGLPSQPPQSQFPPSVQQFPSRPGQPGHGPPPSQVISLPNAQANRHVTSGSSLPPPSVPTSINYAPGLGGPGAPLSSSYTFVPSSYGQPPVAANTVSQYQPISQMRPPSIPAGGLAGSSSVNQSITPVTPMQLNGEQSSVTNDLHPTKPNEETTMDWKEHLAANGRRYYYNKRTRQSSWEKPFELMTPIERADASTDWKEFASPEGRTYYYNKTTKQSKWEIPEELKLARKRLEKASLVEAQADTLANSHVPAFVPPSVDKAPSVADASSLTAQVTPSSPVPVTPVAAAVDLQSQPASESPGLAVMASSLTSNSDEVQTTENIVSTVSGRSEKVNSIGIEEKIVSQEPLTYTDKLEAKNAFKALLESASVGSDWTWDQAMRVIINDRRYGALRTLGERKQAFNEYLSQKKKQDAEERRSKQKKAREEFKNMLEESKELTSTMRWSKAVTLFENDERFKAVERERDRRDIFDSFLQELGDKERAKAQEERKRNIMEYRQFLESCDFIKASTQWRKVQDRLEADERCSRLEKIDRLEIFQDYLRDLEKEEEEQRKIQKEEQRKAERKNRDEFRKLLEEHVAAGTMTAKTHWRDYYLKVKDLPAYLAVASNTSGSTPKDLFEDVLEELEKQYHEDKSRIKDAVKLKKVAMASTWTLDDLKAAIVEDISSPSISDMNLKIVFDELLERAKEKEEKDAKKRKRLADDFLNLLHSTKDITASSKWESCKELFEGSREFSSINEESICQDIFEEYIAQLKEHAKENERKRKEEKAKKEKEREEKDRRKAKHRRDKDRGHEREKEHMKKEEADTGSADTTDDHFNNDNKRSVNDSNKKQRKRHHDAEDDLNESEKDRSKSSHRHSSDHKKSKWHASTPDSDGESRHKRHKRDHRNGSRRYGDHEELEDGEFGEDGETR
Length956
PositionUnknown
OrganismRicinus communis (Castor bean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Acalyphoideae> Acalypheae> Ricinus.
Aromaticity0.06
Grand average of hydropathy-1.097
Instability index58.35
Isoelectric point6.63
Molecular weight109145.07
Publications
PubMed=20729833

Function

Annotated function 
GO - Cellular Component
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25592
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     172.13|      37|      38|     195|     231|       1
---------------------------------------------------------------------------
  195-  231 (72.50/40.30)	PNE..ETTMDWKEHLAANGRRYYYNKRTRQSSWEKPFEL
  234-  272 (66.24/36.21)	PIEraDASTDWKEFASPEGRTYYYNKTTKQSKWEIPEEL
  792-  821 (33.39/14.71)	..E..EYIAQLKEHAKENERKRKEEKAKKEKERE.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     111.47|      21|      22|      43|      63|       2
---------------------------------------------------------------------------
   43-   63 (39.31/16.89)	PLMNA........GLPSQPPQSQFPPS.VQ
   66-   82 (23.41/ 7.48)	P............SRPGQPGHG.PPPSqVI
   83-  109 (22.75/ 7.09)	SLPNAqanrhvtsG.SSLPPPS.VPTS.IN
  117-  133 (26.00/ 9.02)	P............GAPLSSSYTFVPSS.YG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      77.34|      17|      17|     871|     887|       3
---------------------------------------------------------------------------
  871-  887 (27.24/14.05)	NDSNKKQRKRHHDAEDD
  902-  918 (27.40/14.18)	HSSDHKKSKWHASTPDS
  920-  931 (22.70/10.32)	GESRHKRHKR.....DH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      78.93|      17|      17|     354|     370|       4
---------------------------------------------------------------------------
  315-  333 (19.62/10.17)	SSLTAQvtpSS...PVPV...TP.VA
  334-  353 (16.78/ 7.46)	AAVDLQ...SQpasESPG...LAVMA
  354-  370 (25.26/15.51)	SSLTSN...SD...EVQT...TENIV
  371-  390 (17.27/ 7.93)	STVSGR...SE...KVNSigiEEKIV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      79.13|      17|      17|     157|     173|       5
---------------------------------------------------------------------------
  138-  154 (27.11/14.50)	AANTVSQ.YQPISQMRPP
  157-  173 (28.54/15.62)	PAGGLAG.SSSVNQSITP
  176-  192 (23.48/11.67)	PMQ.LNGeQSSVTNDLHP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     137.41|      23|      23|     497|     519|       6
---------------------------------------------------------------------------
  431-  451 (21.31/ 7.62)	..NDRRYGALRTLGERKQA..FNEY
  459-  477 (20.19/ 6.86)	.DAEERRS...KQKKAREE..FKNM
  497-  519 (38.59/19.37)	FENDERFKAVERERDRRDI..FDSF
  523-  545 (24.39/ 9.71)	LGDKERAKAQE.ER.KRNImeYRQF
  565-  586 (32.93/15.52)	LEADERCSRLEK.IDRLEI..FQDY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.53|      14|      17|       5|      18|       7
---------------------------------------------------------------------------
    5-   18 (29.14/19.61)	RNFVPPMPMQFRPV
   25-   38 (27.39/17.96)	QQFIPVASPHFQPV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      32.51|      10|      46|     613|     622|       8
---------------------------------------------------------------------------
  594-  603 (15.67/ 8.78)	EEEQRKIQKE
  613-  622 (16.84/10.03)	RDEFRKLLEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      32.02|      10|      67|     822|     831|       9
---------------------------------------------------------------------------
  822-  831 (16.62/ 8.07)	EKDRRKAKHR
  892-  901 (15.40/ 6.90)	EKDRSKSSHR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.60|      36|      65|     662|     697|      10
---------------------------------------------------------------------------
  662-  697 (63.24/34.81)	DL....FED.............VLEEL.....EKQYHEDKSR...IKDAVKL....KKVAMASTW
  701-  765 (30.36/13.28)	DLkaaiVEDisspsisdmnlkiVFDELlerakEKEEKDAKKRkrlADDFLNLlhstKDITASSKW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.69|      10|      78|     554|     563|      14
---------------------------------------------------------------------------
  554-  563 (20.49/11.79)	ASTQWR....KVQD
  631-  644 (15.20/ 6.94)	AKTHWRdyylKVKD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25592 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MDPPRNFVPPMPMQFRPVVPAQQSQQFIPVASPHFQPVGRGVPLMNAGLPSQPPQSQFPPSVQQFPSRPGQPGHGPPPSQVISLPNAQANRHVTSGSSLPPPSVPTSINYAPGLGG
2) PPVAANTVSQYQPISQMRPPSIPAGGLAGSSSVNQSITPVTPMQLNGEQSSVTNDLHPTKPNEETTMDWK
3) QLKEHAKENERKRKEEKAKKEKEREEKDRRKAKHRRDKDRGHEREKEHMKKEEADTGSADTTDDHFNNDNKRSVNDSNKKQRKRHHDAEDDLNESEKDRSKSSHRHSSDHKKSKWHASTPDSDGESRHKRHKRDHRNGSRRYGDHEELEDGEFGEDGETR
1
135
797
116
204
956










Molecular Recognition Features






MoRF SequenceStartStop




1) FRPVV
2) KSKWH
3) YGDHEELEDGEF
15
908
938
19
912
949