<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25589

Description Uncharacterized protein
SequenceMESANQLLERLFANIQRVCNFEYQLNQQQIIQMLIDTKPCKPMAYCNLESEKSASWVSFDIYMENIMDGKQLHIRSSIAILRETIKTLQVLNRASWQETFLALWLSALRLVQRERDPVEGPIPHLESRLCILLTIVPLAIANILEDETKFCSSALQGAGTSGHMETSGLGGGNHIDASVNAGGNMRHLIVEACIARNLIDASAYFWPGYVPAAAISMSDLPPLQKSPWLTFMEGSALNNSLVNSLLTTPATSLAEIEKLYHIALNGSAEQSAAAKILCGASLTRGWNIQEHVVHYLVKLLSPPVPSTHSGLRSHLVDYAPMLSAILFGASSIDNVHILSLHGVIPEFAASLMPICETFGSLMPTSTNVSSTCDEPSFYMVFSAAFLFLLRLWKFYRPSVEQWLTGGGTLGSEITLEYLLMLRNRRIASKNSAALGEINSVNSDSVQIESISDKPVYVDFYPKLRAWYCQNKSCVASTLSGLSTGNPVHQVANKILNMIYSKMTRIGTSPGNSSTLSSNSLCGSSSSSGEDPYQRPMLPAWEVLEAVPFVLEAILTACAHGRLSSRDLTTGLRDLIDFLPASLGGIISYFAAEVTRGTWKPVPMNGTDWPSPAAVLSSVESEMREILSAAGVDFPTFSSRHLPVMLPLPMAALVSLTITFKLNKGLDYLHVVVGPALENCASGCPWPSVPIIGSLWAQKVRRWHDYIVVSCARSVFRQNKEAVSKLLRSCFSSFLGSVNVSSPLLTNQCSIGGLLGNTIPSACGSLAPGFLYLRSCRTIQDIQYVNGVIIGLVGEHARESAARWANTSSSRLKSSQASLNLAAAKAREAATLGASLLCISGGMNLVQELYLETIPTWLLSSKAMKHGEMSVVSRIVEGYAMAYMLVLSGSLVWGAGSKSPSWALSRRAHIVGSHMDFLAGVLEGHISLGCHPATWKAYFSCLVRLLASFAPAWIQEVRLETMKKLANGLRGWHETELAISLLERGGVAAIGLVAELVNVLD
Length1000
PositionTail
OrganismRicinus communis (Castor bean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Acalyphoideae> Acalypheae> Ricinus.
Aromaticity0.08
Grand average of hydropathy0.190
Instability index51.66
Isoelectric point7.08
Molecular weight108562.18
Publications
PubMed=20729833

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25589
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     235.87|      66|      76|     392|     466|       1
---------------------------------------------------------------------------
  318-  390 (91.94/44.77)	YAPMLSAILFG....ASSIDNVHILSLHG..VIPEFAASLMPIcetfGSLMPTSTNVSSTCDEPSFymvfsAAFLFLLR..
  395-  466 (104.17/72.81)	YRPSVEQWLTGggtlGSEITLEYLLMLRNrrIASKNSAALGEI....NSVNSDSVQIESISDKPVY.....VDFYPKLRAW
  511-  540 (39.77/14.55)	...................................NSSTLSS.....NSLCGSS...SSSGEDP.Y.....QR..PMLPAW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     216.00|      68|      76|     672|     747|       2
---------------------------------------------------------------------------
  672-  743 (108.38/78.67)	VGPALENC.ASGCPwPSVPiiGSLWAQKVRRWHD..YIVVSCARSVFRQNKEAVSKLLRSCfSSFLGSVNVSSPL
  750-  820 (107.63/56.10)	IGGLLGNTiPSACG.SLAP..GFLYLRSCRTIQDiqYVNGVIIGLVGEHARESAARWANTS.SSRLKSSQASLNL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     189.86|      59|     683|     189|     251|       3
---------------------------------------------------------------------------
  189-  251 (89.21/74.85)	IVEA.CIARNLIDASAYFWPGYVPAAAISMSDLPPLQKSPwLTFMEGsALNNSLvnSLLTTPAT
  874-  933 (100.66/66.62)	IVEGyAMAYMLVLSGSLVWGAGSKSPSWALSRRAHIVGSH.MDFLAG.VLEGHI..SLGCHPAT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.89|      19|     310|     167|     185|       4
---------------------------------------------------------------------------
  167-  185 (35.35/22.70)	SGLGGGNHIDASVNAGGNM
  479-  497 (34.54/22.00)	SGLSTGNPVHQVANKILNM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.33|      21|      71|     542|     571|       5
---------------------------------------------------------------------------
  559-  621 (12.42/12.09)	HGRLSSRDLTTGLrdlidflpaslggiisyfaaevtrgtwkpvpmngtdwpspaaVLSSVESE
  633-  653 (36.91/13.57)	FPTFSSRHLPVML..........................................PLPMAALV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25589 with Med33 domain of Kingdom Viridiplantae
Unable to open file!