<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25583

Description Uncharacterized protein
SequenceMNNQQHQQSQIVGSGTGGNKEPEEESVGQSLEIVAKGAGSDKPAGEPVSSEEDSVEKPDDPMEEDSVSPATVFCIRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANPPFWIPIHIVIPERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRITIWTQPSQGPVNMVRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSSSSTNSKSTFEEKFLSQQSQTSARWPNFLCVCSVFSSGSVQLHWSQWPPSRTNATPEWFCTSKGLLGAGPSGIMAADAIVTDSGAMHVAGVPIVNPSTVVVWEVTPGLGHGFQATPKTSISNGVPPSLNPPNWSGFAPLAAYLFSWQEYLISEAKQGRKHTDQDFSNTVSLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSLQPVVLHQIFGNPTSSFGGQAPMQTVWVSKVDTSIPPTNDFKNHQTVSAGPAPDARKASDSGVEKAKSLTFDPFDLPSDVRSLARIVYSAHGGEIAIAFLRGGVHIFSGPNFTPVDSYQINVGSAIAAPAFSSTSCCSASVWHDTSKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSLLVGVDWWDAVGCTQSAAEDNIVSLNSVIAVLDADFHSLPSTQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPEPWQASGETLSGIDPEAMAVEPSLVPSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRSMVTSPTQSAASPATSQGGQNGTTSSTGSTQMQAWVQGAIAKISSTNDGVSNATPNPISGPSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRTQLPRFIGVAQRSTDTNMQKPQSGAPGKVEEANSVSSKPAQAMVRSDEVQTARGGQLVPGGKGVEEGPAGRSRLGYGNAGQGYTFEEVKVLFLILMDLCRRTAALAHPLPVSQVGSSNIQVRLHYINGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPSEEWHRRNMFGGPWSDPEDITSADDTPRMSSYTDSLDFSSLENCDVYYGVNGLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCIRCLRQTSAFASPGATNPPNQNDREAWWISRWAYGCPMCGGTWVRVV
Length1255
PositionTail
OrganismRicinus communis (Castor bean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Acalyphoideae> Acalypheae> Ricinus.
Aromaticity0.08
Grand average of hydropathy-0.231
Instability index46.65
Isoelectric point6.20
Molecular weight135678.13
Publications
PubMed=20729833

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25583
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.56|      17|     171|     428|     444|       1
---------------------------------------------------------------------------
  428-  444 (31.30/17.86)	GSGVTAVAFDPTR..GGSV
  600-  618 (24.26/12.04)	GSAIAAPAFSSTSccSASV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     126.72|      40|     246|     522|     594|       4
---------------------------------------------------------------------------
  540-  587 (56.42/76.85)	VEKAKSLTFDPfdLPSDVRSLAriVYSAHGGEIaiafLRGGVHIFSGP
  964- 1003 (70.29/25.77)	VEEANSVSSKP..AQAMVRSDE..VQTARGGQL....VPGGKGVEEGP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     166.98|      51|     341|     701|     802|       7
---------------------------------------------------------------------------
  741-  802 (71.74/103.78)	LLLDMLGKGIESALINPSALVPEPWQasgetlsgiDPEAMAVEPSlVPSIQAYVDAvLDLAS
 1094- 1144 (95.24/38.48)	LLLRELELHPPSEEWHRRNMFGGPWS.........DPEDITSADD.TPRMSSYTDS.LDFSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     286.94|      88|     763|     101|     198|       8
---------------------------------------------------------------------------
  101-  198 (141.56/100.37)	AWC.GKLNAIACASETCAR.IPSSNANPPFWIPIHIVIPERPTECAVfNVIADsprdsVQFIEwspTSCpRALLIANFHGRIT....IWTQPSQGPVNMVRDAS
  865-  958 (145.39/77.54)	AWVqGAIAKISSTNDGVSNaTPNPISGPSSFMPISINTGTFPGTPAV.RLIGD.....CHFLH...RLC.QLLLFCFFFRRTQlprfIGVAQRSTDTNMQKPQS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      94.04|      16|     573|     660|     675|       9
---------------------------------------------------------------------------
  660-  675 (37.01/23.40)	WWSLLVGVDWWDAVGC
 1197- 1211 (31.78/18.91)	WKTGLEGV.WYKCIRC
 1235- 1244 (25.25/13.30)	WW.....ISRW.AYGC
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25583 with Med16 domain of Kingdom Viridiplantae
Unable to open file!