<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25581

Description "Cdk8, putative"
SequenceMGDGNTSNTNRGITSNSNTNEKPEWLQQYNLIGKIGEGTYGLVFLAKTKSPANRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREISHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHRDKGPHGINQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGDEHGVVKIADFGLARIYQAPLKPLSDNGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGAEAKSMPNPFQLDQLDKIFKVLGHPTLEKWPTLANLPHWQSDLQHIQAHKYENTGLHNVVHLSPKGPPFDLLSKMLEYDPRKRITAAQALEHEYFRIEPLPGCNALVPSQPGEKVINYPTRPVDTNTDFEGTTSLQPPQTVSSGNAVSGGIAGGHGVAGRSAPRPMPMGMQRMQPQAMAAYNIASQAGMGGGMNPAGIPMTRGVAAQPHQQHLRRKDPPGLGTGYPQQKSRRQ
Length477
PositionKinase
OrganismRicinus communis (Castor bean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Acalyphoideae> Acalypheae> Ricinus.
Aromaticity0.07
Grand average of hydropathy-0.441
Instability index35.19
Isoelectric point9.18
Molecular weight52721.62
Publications
PubMed=20729833

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
cyclin-dependent protein serine/threonine kinase activity	GO:0004693	IBA:GO_Central
RNA polymerase II CTD heptapeptide repeat kinase activity	GO:0008353	IBA:GO_Central

GO - Biological Process
protein phosphorylation	GO:0006468	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25581
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.32|      16|      42|     306|     325|       1
---------------------------------------------------------------------------
  306-  325 (25.51/28.33)	LSPKGPPfdllSKMLEYDPR
  350-  365 (29.81/20.06)	LVPSQPG....EKVINYPTR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.73|      28|      42|     167|     196|       2
---------------------------------------------------------------------------
  167-  196 (44.47/36.28)	LVMGEGDEHGVVKIADFGLarIYQA..PLKPL
  212-  241 (45.26/30.20)	LLLGAKHYTSAVDMWAVGC..IFAEllTLKPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     120.77|      36|      40|     380|     419|       3
---------------------------------------------------------------------------
  384-  419 (67.69/37.88)	TVSSGNAVS.GGIAGGHGVAG....RS.APRPMPMGMQRMQP
  421-  462 (53.09/21.04)	AMAAYNIASqAGMGGGMNPAGipmtRGvAAQPHQQHLRRKDP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25581 with CDK8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) PSQPGEKVINYPTRPVDTNTDFEGTTSLQPPQTVSSGNAVSGGIAGGHGVAGRSAPRPMPMGMQRMQPQAMAAYNIASQAGMGGGMNPAGIPMTRGVAAQPHQQHLRRKDPPGLGTGYPQQKSRRQ
352
477










Molecular Recognition Features

Cannot open file output1!




MoRF SequenceStartStop




1) HQQHLRRKDP
2) RGKSIAIKKFKQ
3) TGYPQQKSRR
453
54
467
462
65
476