<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25578

Description Uncharacterized protein
SequenceMKSVSLDYWRNYFRTANSDIFAIIDHAIMVAASDCPKEFRLRRDRIAERLFSCRLTRCSGCNHVDLAVPAHEGENDDGGACKRRDDHHVEDDDDDDVDIDVCEFEAGGTSKESKVNSSNNRDDNDIDIGEVNVNDQLLSNFSYGEAEALTDEIEEESMVVGEVLRIKDILLHSRDESESVLFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGSQQIRHLARVLIDGWKVLVDEWYSTTKAIRGDEGTPESVNPSVVDEEDGLPSPPLDEAFFFAAQNTGIELAQFFDGMDDDGNPRNSGEFIKNRENGRKSSLEQKNIPKRKEHTPSEANVVAKDNKSHQSRRQEAMRKPNKPSTTVSGPGRPTKQSVEQKANNESKIQRKTDKLVTQRKLPGGQQDKFKCSDDDAVQKKLEATKRKLQERYQQAENAKRQRTIQVMELHDLPKQALVQKNPNMRPGSHNRHWAHGRRQIS
Length473
PositionUnknown
OrganismRicinus communis (Castor bean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Acalyphoideae> Acalypheae> Ricinus.
Aromaticity0.05
Grand average of hydropathy-0.943
Instability index42.59
Isoelectric point5.86
Molecular weight53552.86
Publications
PubMed=20729833

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25578
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.57|      26|      30|      72|     101|       1
---------------------------------------------------------------------------
   67-   99 (37.15/22.78)	AVpahEGenddGGACKRRDDHHVEDDDDDDVDI
  100-  128 (39.42/16.61)	DVcefEA....GGTSKESKVNSSNNRDDNDIDI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.74|      19|      30|     307|     336|       2
---------------------------------------------------------------------------
  309-  329 (28.21/35.49)	NGRKSSLEQKNIpkRKEHTPS
  338-  356 (34.53/11.58)	NKSHQSRRQEAM..RKPNKPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.42|      27|      30|     365|     393|       3
---------------------------------------------------------------------------
  365-  393 (39.73/25.65)	PTKQSVEQKANNESKIQRKTDklVTQRKL
  394-  420 (46.69/25.03)	PGGQQDKFKCSDDDAVQKKLE..ATKRKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.86|      17|      30|     129|     147|       4
---------------------------------------------------------------------------
  129-  147 (26.08/23.33)	GEV.NVNDQLLsnFSYGEAE
  161-  178 (25.78/15.80)	GEVlRIKDILL..HSRDESE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25578 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AQFFDGMDDDGNPRNSGEFIKNRENGRKSSLEQKNIPKRKEHTPSEANVVAKDNKSHQSRRQEAMRKPNKPSTTVSGPGRPTKQSVEQKANNESKIQRKTDKLVTQRKLPGGQQDKFKCSDDDAVQKKLEATKRKLQERYQQAENAKRQRTIQVMELHDLPKQALVQKNPNMRPGSHNRHWAHGRRQIS
285
473










Molecular Recognition Features






MoRF SequenceStartStop




1) GSHNRHWAHGRRQIS
2) KCSDDDAVQKKL
459
402
473
413