<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25576

Description Uncharacterized protein
SequenceMAVSIGSSIWDYVVEMTKLAQEKGGDPLLWALQISSNLSSNGVSLPSPELADVLVSYICWDNNVPIIWKFLEKALVLKIVPSLMVLALLSDRVIPCRHYRPVAYRLFMELLKRQAFSLKCQINGMNYEKIMKSIDAVLHLSQNFGLQASDPGILVVEFIFSIVWQLLDASLDDEGLLELTPEEKSRWATKPQEMEIDGLDNYDEQRTEHHEKLQNLNTVMAIEIIGLFLEHKLTSRILHLARQNLPTHWVRFVQRLHLLGANSSAIRSSKTLTAEDLLQLTSKTHASFTRVSKTSSLQKFHEVMALGSLVSSAGLCHGSSRSALWLPLDLALEDAMDGYQVNATSAIEIITGLVKTLQAVNSTTWHDTFLGLWIAALRLVQRERDPIEGPIPRLDARLCILLSIIPLVVSDLIEEEENAPTEESESGSTNHWKENKFQGKRRNDLVFSLQLLGDHQGLLSPPQSVVSAANQAATKAMLFVSGITIGSAYFECINMKDMPIDCSGNMRHLIVEACIARNLLDTSAYFWPGYVNGCINQIPHSVPAQVPSWSSFMKGSLLTPAMISALVSSPASSLAELEKVYELAVKGSDDEKISAATILCGASLLRGWNIQEHTVHFITRLLSPPVPADYSGGDSHLISYAPILNVLIVGLASVDCVQIFSLHGLVPQLACSLMPICEVFGSCVPDVSWTLPTGEDISAHAVFSNAFALLLKLWRFNHPPLEHGVGDVPTVGSQLTPEYLLSVRNSHLVSSGSTHKDRNKRRLSAVATSSSLEPVFVDSFPKLKVWYRQHQKCIASTLSGLVHGTPVHQIVDVLLNMMFRKINRGSQSVTTVTSGSSGSNGSISDDSSLRPKLPAWDILEAVPFVVDAALTACAHGRLSPRELATGLKDLADYLPASLATIVSYFSAEVSRGVWKPVFMNGTDWPSPAANLSNVEEKIKKILAATGVDIPSLASGGSSPATLPLPLAAFVSLTITYKIDKASERFLNLAGPALECLAAGCPWPCMPIVASLWTQKAKRWFDFLVFSASRTVFLHDSNAVFQLLKSCFAATLGLSATAIYSNGGVGALLGHGFGSHFCGGISPVAPGILYLRVYRSIREIVFVTEEIISLIMLSVREIACSGLPREKLEKLKRSKNGLRCGQVSLTAAMTWVKVAASLGASLVWLSGGVGLVHSLFKETLPSWFIAVHRSEQEEGPKGMVAMLQGYALAYFAVLSGAFAWGVDSSSSASKRRPKVIGAHMELLASALDGKISLGCDWATWRSYVSGFVSLMVGCAPSWVLEVDADVLKRLSKGLRQWNEGELALALLGIGGVETMGAAAELIIEDQ
Length1325
PositionTail
OrganismRicinus communis (Castor bean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Acalyphoideae> Acalypheae> Ricinus.
Aromaticity0.08
Grand average of hydropathy0.195
Instability index41.92
Isoelectric point6.32
Molecular weight144116.89
Publications
PubMed=20729833

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25576
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     248.14|      65|     272|     944|    1019|       1
---------------------------------------------------------------------------
  310-  373 (92.71/46.89)	VSSAGLCHGSSRSALwL...........PLDLALEDAMD.GYQVNATSA...........IEIITGLVKTLQAvnSTTWH..DTFLGLW
  874-  932 (43.00/18.41)	......AHGRLSPRE.LatglkdladylPASLATIVSY........FSAEvsrgvwkpvFMN.............GTDWPSPAANLS..
  947- 1012 (112.43/85.79)	VDIPSLASGGSSPAT.L...........PLPLAAFVSLTiTYKIDKASER.........FLNLAGPALECLAA..GCPWPCMPIVASLW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     111.28|      33|     180|     536|     569|       2
---------------------------------------------------------------------------
  536-  569 (55.21/41.30)	NQIP..HSVpAQVPSWSSFMKGSLLTPAMISALVSS
  717-  751 (56.07/36.37)	NHPPleHGV.GDVPTVGSQLTPEYLLSVRNSHLVSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     213.52|      67|      93|    1156|    1229|       3
---------------------------------------------------------------------------
 1156- 1229 (102.70/70.30)	SLGAS.LVWLSGGVGLVhSLFKETLPSWFIAVHRSEQEEGPKGMVAMLQG.YALAYFAVlsGafawGVDSSSSASK
 1251- 1319 (110.82/57.76)	SLGCDwATWRSYVSGFV.SLMVGCAPSWVLEVDADVLKRLSKGLRQWNEGeLALALLGI..G....GVETMGAAAE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     139.44|      44|     161|     458|     503|       4
---------------------------------------------------------------------------
  458-  502 (73.41/52.00)	LLSPP.QSVVSAANQAATKAMLFVSGITIGSAYFECINMKD............MPIdC
  621-  677 (66.04/37.50)	LLSPPvPADYSGGDSHLISYAPILNVLIVGLASVDCVQIFSlhglvpqlacslMPI.C
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      66.51|      16|     159|      64|      79|       5
---------------------------------------------------------------------------
   64-   79 (27.31/19.33)	VPIIW.KFLEKALVLKI
  222-  237 (24.46/16.43)	IEIIG.LFLEHKLTSRI
  245-  259 (14.74/ 6.54)	LPTHWvRFVQRLHLL..
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25576 with Med33 domain of Kingdom Viridiplantae
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