<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25574

Description "Pre-mRNA-processing protein PRP40, putative"
SequenceMSSQRQGFAPPNSNPPVPVPGFTPPSFSYNISQSALHFSANQQFHSTSDASASVPQATALSSAPIVSHSSSTSTKTTSLSSPSFLVPPGLAGTPGPAGSVSCGPMILPPVTVDSATSSVQRPVMPTVTHASNPVVQQQSYHTYPSLPAMAASAQGLWFHPPQMGGMPRTPFLPYPPAVFPGSYPLPAHGISRPSISSPDFQPSGAPPVGIPGANPPSSAASGHQLMGTPGMQKEIPPPGIDNRSQIHDFGTKNNAATSDSLDAWTAHKTDAGVVYYYNAVTGVSTYEKPPGFKSEPEKVPMQPTPVSMENLAGTDWALITTNDGKNYYYNNKTKLSSWQIPSEVTELKKKQEAELKEQEMSVSSSSVLNEKGSVQISLSAPAINTGGRDATALRASNALGASSALDLIKKKLQDSGTPVTSSPAPVSLGITTPESNGSRAMEATSKGLPSENSKEKLKDANGDANASDSSSDSEEEDNGPTKEECIIQFKDMLKERGIAPFSKWEKVLPKIVFDPRFQAIPSHSARRSLFEHYVKTRAEEERKEKRAAQKAAIEGFRQLLEEASEEIDHNTDYQSFRRKWGNDPRFEAVDRKDREHLLHERVLPLKKAAQEKAQAERAAAAASFKSMLQDKGDLTVNSRWSKVKESLRNDPRYKSVKHEEREVLFNEYLSELKAAEEEAEWKAKVKREEQEKLKERERELRKRKEREEQEMERVREKVRRKEAVASFQALLVETIKDPQASWTESKTRLEKDPQGRGTNPNLDPSDTEKLFREHVKMLHERCTNEFKALLAEVINAEAASQKTEDGKTVLDSWTTAKRVLKLDPRYNKMPRKEREVLWRRHAEDMLRKQKTTLDEKEDKHTDPRGRSSTTDSGRHLSGSKRTHDRR
Length886
PositionUnknown
OrganismRicinus communis (Castor bean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Acalyphoideae> Acalypheae> Ricinus.
Aromaticity0.06
Grand average of hydropathy-0.841
Instability index53.69
Isoelectric point8.78
Molecular weight97955.38
Publications
PubMed=20729833

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
RNA polymerase binding	GO:0070063	IBA:GO_Central
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25574
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     436.17|      65|      65|     531|     595|       1
---------------------------------------------------------------------------
  472-  526 (68.08/41.55)	...........DSEEEDNGP..TKEECIIQFKDMLKE........RGIAPFSKWEKVLPKIVFDPRFQAIPSHSAR
  531-  595 (102.39/66.52)	EHY..VKT.RAEEERKEKRA..AQKAAIEGFRQLLEE......ASEEIDHNTDYQSFRRKWGNDPRFEAVDRKDRE
  600-  662 (79.72/50.02)	ERVlpLKK.AAQEKAQAERA..AAAAS...FKSMLQD.......KGDLTVNSRWSKVKESLRNDPRYKSVKHEERE
  666-  707 (48.24/27.10)	NEY..LSElKAAEEEAEWKA............KVKRE......EQEKL..............KERERELRKRKERE
  708-  768 (57.63/33.94)	.........EQEMERVREKV..RRKEAVASFQALLVEtikdpqAS.WTESKTRLEKDPQGRGTNPNL...DPSDTE
  772-  835 (80.11/50.30)	REH..VKM.LHERCTNEFKAllAEVINAEAASQKTED......GKTVLD...SWTTAKRVLKLDPRYNKMPRKERE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     138.36|      41|      49|     237|     284|       2
---------------------------------------------------------------------------
  237-  284 (66.62/57.22)	PPGIdnRS.......QIHDFGTKNNAATSdsldaWTAHKTDAGVVYYYNAVTGVS
  289-  336 (71.74/44.13)	PPGF..KSepekvpmQPTPVSMENLAGTD.....WALITTNDGKNYYYNNKTKLS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.17|      10|      66|      15|      32|       3
---------------------------------------------------------------------------
   15-   25 (19.38/ 7.58)	PPVPVPGFTpP
  108-  117 (14.79/ 6.57)	PPVTVDSAT.S
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     103.21|      15|      15|     198|     212|       4
---------------------------------------------------------------------------
   82-   95 (20.83/ 6.91)	PSFL...VPPglAGTPG
  170-  181 (25.06/ 9.73)	P.FLP..YPP..AVFPG
  198-  212 (31.27/13.88)	PDFQPSGAPP..VGIPG
  216-  230 (26.05/10.40)	PSSAASGHQL..MGTPG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.02|       9|      37|     143|     152|       5
---------------------------------------------------------------------------
  143-  152 (13.84/11.90)	YPsLPAMAAS
  183-  191 (19.18/10.91)	YP.LPAHGIS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.07|      15|      16|      48|      62|       6
---------------------------------------------------------------------------
   48-   62 (24.34/15.46)	SDASASVPQATALSS
   67-   81 (24.74/15.86)	SHSSSTSTKTTSLSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.43|      23|      67|     381|     403|       8
---------------------------------------------------------------------------
  381-  403 (38.92/20.29)	PAINTGGRDATALRASNALGASS
  449-  471 (35.52/17.93)	PSENSKEKLKDANGDANASDSSS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25574 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ANQQFHSTSDASASVPQATALSSAPIVSHSSSTST
2) IPSEVTELKKKQEAELKEQEMSVSSSSVLNEK
3) ISRPSISSPDFQPSGAPPVGIPGANPPSSAASGHQLMGTPGMQKEIPPPGIDNRSQIHDFGTKNNAATSDSLDA
4) KKLQDSGTPVTSSPAPVSLGITTPESNGSRAMEATSKGLPSENSKEKLKDANGDANASDSSSDSEEEDNGPTKEECII
5) PRKEREVLWRRHAEDMLRKQKTTLDEKEDKHTDPRGRSSTTDSGRHLSGSKRTHDRR
6) SWTESKTRLEKDPQGRGTNPNLDPSDTEKLFREHV
7) TVDSATSSVQRPVMPTVTHASNPVVQQQSYHTYPS
40
340
190
410
830
741
111
74
371
263
487
886
775
145










Molecular Recognition Features






MoRF SequenceStartStop




NANANA