<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25573

Description "ATP binding protein, putative"
SequenceMTSVVVAVNGGDGVGGKGSRRAVRWAVENLLPIAHRFILVHVIPAITFIPTPSGDRIPIEELEDNVVSLYVQEVKVKLEEVFIPFKRLCKTQQMETLVLEDDNPATGILRYASQSGINCIVLGSWSPTCIIRKLKGPGIPATVLNCAPETCDVFVVSKNKIITTSTNFSSINETSSRCWMFKNRDHKKGYSNISKQVSGSELYSSAVESKVQKSFEASSLSELRFLDSQAPEHRDSSTNDSTDVDRAYQDMGDNLLTISTRRCESTASTISIQVIGETCMDFFSFLQSYVQAELERLRLELQNTVSMYKRACEELVHTQSQVELLSSECVEEARRVNAALDREETLRKIAAEDKARYLQAKMEVENAKNLLAKEAYERQMAEHRAYIESSEKQKIADALFLNDKRYKRYTRDEIEAATDFFSESNVIGEGGYGKVYKCNLDHTPVAVKVLRSDAVNKKEEFLREVEVLSQLHHPHLVLLLGACPESGCLVYEYLENGSLDDCIFHRNEKPSLPWFIRFRIVFEVACALAFLHNSKPDPIVHRDLKPGNILLDRNYVSKIGDVGLAKLMTDIVPDNITEYKDSIIAGTLFYMDPEYQRTGTIRPKSDLYAFGVIILQLLTARRANGLVLAAENAIANGCLVDILDTSIMDWPLAEAEQLAQIALKCSNLKCRDRPDLDTEVLPVLRRLVEVGPASIKVERSNTYAPSYYFCPILQEIMDDPYIAADGFTYEHRAIKAWLGRHNVSPVTKLRLQHSMLTPNHTLRSAIQEWRSRVHFQVP
Length778
PositionTail
OrganismRicinus communis (Castor bean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Acalyphoideae> Acalypheae> Ricinus.
Aromaticity0.08
Grand average of hydropathy-0.231
Instability index47.89
Isoelectric point5.93
Molecular weight87692.20
Publications
PubMed=20729833

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25573
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.01|      12|      15|     295|     307|       1
---------------------------------------------------------------------------
  295-  307 (14.78/12.94)	ERLrLELQNTVSM
  313-  324 (19.22/11.26)	EEL.VHTQSQVEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.57|      24|     149|     476|     500|       2
---------------------------------------------------------------------------
  476-  500 (38.22/31.51)	LVLLLGACPESGCLVyEYLENGSLD
  626-  649 (40.35/27.31)	LVLAAENAIANGCLV.DILDTSIMD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     100.08|      20|      20|     110|     129|       3
---------------------------------------------------------------------------
   87-  107 (28.23/15.35)	RLCKTQQMETLVLEDDNPaTG
  110-  129 (36.66/21.88)	RYASQSGINCIVLGSWSP.TC
  132-  151 (35.20/20.75)	RKLKGPGIPATVLNCAPE.TC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     170.68|      63|     149|     206|     277|       4
---------------------------------------------------------------------------
  206-  277 (94.02/78.63)	AVESK...VQKSFE...ASSLSELRFLDSQAPEHRD..SSTNDstdvdrayQDMGDNLLtISTRR........CESTASTIS.IQVIGE
  350-  429 (76.66/46.78)	AAEDKaryLQAKMEvenAKNLLAKEAYERQMAEHRAyiESSEK........QKIADALF.LNDKRykrytrdeIEAATDFFSeSNVIGE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.16|      10|      35|     501|     510|       5
---------------------------------------------------------------------------
  501-  510 (21.79/13.35)	DCIFHRNEKP
  537-  546 (20.36/12.03)	DPIVHRDLKP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25573 with Med32 domain of Kingdom Viridiplantae
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