<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25570

Description Uncharacterized protein
SequenceMMQDQQPSAPQMVMAERLNPAVQQQLNLESVKTRAISLFKAISRILEEFDAYARSNANPKWQDILGQYSMVNLELFNIVDEIKKVSKAFVVHPKNVNAENATILPVMLSSKLLLEMEIDDNSKREQLLQGLQNLPVSSQIEKLKTRIDMIAAACESAEKVLADTRKAYQIGTRQGPTIIPTLDKTQAAKIQEQENLLRAAVNFGEGLGMAADQRQITSALPMHLADVLTVGDGVHNFSDSAGMYMKSTPPLSSNSINNQGPLLQASGSALMGRSAASPSAGTNTTSFDNTTTSPLPYANSPRSGTNMMNTPSPQQQTQQQQQQQQRQKIMQLPQHQQQLLAQQLRQSSMQGLGQNQLPQLHDLQGQGQQKFQPLHGQHQMQFSQSLGHQQFQGRQLPSGHVQHGMGQSPLNQGNPLNRHLSQFSGTANSALFNAAQGSPNTQMIPNMSATMSSQPLVPRMQFGLTGSNAQRSHASQILNDQMFNMGVSNPGSMMPIQPQQSQQQQQLGSQGAFGNMPPNAQNLQSSMVALQNASQNHPNFVQQRQQNQQ
Length549
PositionHead
OrganismRicinus communis (Castor bean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Acalyphoideae> Acalypheae> Ricinus.
Aromaticity0.04
Grand average of hydropathy-0.617
Instability index58.63
Isoelectric point9.23
Molecular weight60236.17
Publications
PubMed=20729833

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25570
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      85.83|      22|      23|     314|     336|       1
---------------------------------------------------------------------------
  323-  341 (27.92/ 7.75)	QQQRQKIMQ......LPQ.H......qQ.QLLA
  342-  372 (27.39/ 8.59)	QQLRQSSMQglgqnqLPQlHdlQGQG.Q.QKFQ
  373-  397 (30.51/ 9.19)	PLHGQHQMQ......FSQ.SlgHQQF.QgRQLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     137.61|      37|      37|     422|     458|       2
---------------------------------------------------------------------------
  256-  278 (32.53/ 9.00)	........INNQG......PLL...QAS...GS...................ALMGRSAASP
  440-  478 (53.99/19.90)	NTQM....IPNMSATMSSQPLVPrmQFGLTGSN...................AQRSHASQIL
  479-  538 (51.10/18.43)	NDQMfnmgVSNPGSMMPIQPQQS..QQQQQLGSqgafgnmppnaqnlqssmvALQNASQNHP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.32|      27|      38|      38|      75|       3
---------------------------------------------------------------------------
   38-   65 (41.24/46.51)	LFKAISRILEEFDAYARsNANPKWQDIL
   78-  104 (41.08/20.25)	IVDEIKKVSKAFVVHPK.NVNAENATIL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.44|      28|      50|     139|     166|       6
---------------------------------------------------------------------------
  139-  166 (44.41/32.97)	QIEKLKTRIDMIAAACESAEKV..LADTRK
  186-  215 (40.03/29.03)	QAAKIQEQENLLRAAVNFGEGLgmAADQRQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25570 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SDSAGMYMKSTPPLSSNSINNQGPLLQASGSALMGRSAASPSAGTNTTSFDNTTTSPLPYANSPRSGTNMMNTPSPQQQTQQQQQQQQRQKIMQLPQHQQQLLAQQLRQSSMQGLGQNQLPQLHDLQGQGQQKFQPLHGQHQMQFSQSLGHQQFQGRQLPSGHVQHGMGQSPLNQGNPLNRHLSQFSGTANSALFNAAQGSPNTQMIPNMSATMSSQPLVPRMQFGLTGSNAQRSHASQILNDQMFNMGVSNPGSMMPIQPQQSQQQQQLGSQGAFGNMPPNAQNLQSSMVALQNASQNHPNFVQQRQQNQQ
238
549










Molecular Recognition Features






MoRF SequenceStartStop




NANANA